Loading MOVED +1 −0 Original line number Diff line number Diff line Loading @@ -5376,3 +5376,4 @@ sysutils/signon-plugin-oauth2@qt5||2026-06-22|Unflavorize, remove Qt5 flavor sysutils/signon-plugin-oauth2@qt6|sysutils/signon-plugin-oauth2|2026-06-22|Unflavorize net-im/libaccounts-qt@qt5||2026-06-22|Unflavorize, remove Qt5 flavor net-im/libaccounts-qt@qt6|net-im/libaccounts-qt|2026-06-22|Unflavorize science/minc2|science/minc-tools|2026-06-24|Split into science/minc-tools and science/libminc science/Makefile +2 −1 Original line number Diff line number Diff line Loading @@ -154,6 +154,7 @@ SUBDIR += libkml SUBDIR += liblinear SUBDIR += libmbd SUBDIR += libminc SUBDIR += libmsym SUBDIR += libnegf SUBDIR += liboglappth Loading Loading @@ -184,7 +185,7 @@ SUBDIR += medit SUBDIR += meep SUBDIR += metaphysicl SUBDIR += minc2 SUBDIR += minc-tools SUBDIR += mmdb2 SUBDIR += mmg SUBDIR += mmtf-cpp Loading science/minc2/Makefile→science/libminc/Makefile +9 −26 Original line number Diff line number Diff line PORTNAME= minc PORTVERSION= 2.2.00 PORTNAME= libminc PORTVERSION= 2.5.0 DISTVERSIONPREFIX= release- PORTREVISION= 15 PORTEPOCH= 1 CATEGORIES= science biology PKGNAMESUFFIX= 2 MAINTAINER= ports@FreeBSD.org COMMENT= Medical Imaging NetCDF COMMENT= Core library and API of the MINC toolkit WWW= https://www.bic.mni.mcgill.ca/ServicesSoftware/MINC LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= nifticlib>0:science/nifticlib LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf RUN_DEPENDS= bash:shells/bash USES= cmake:testing localbase CMAKE_ON= LIBMINC_BUILD_SHARED_LIBS \ LIBMINC_MINC1_SUPPORT \ LIBMINC_USE_NIFTI LIBMINC_USE_SYSTEM_NIFTI USE_GITHUB= yes GH_ACCOUNT= BIC-MNI MAKE_JOBS_UNSAFE= yes USES= autoreconf bison gmake libtool perl5 shebangfix SHEBANG_FILES= progs/mincview/mincview GNU_CONFIGURE= yes GNU_CONFIGURE_MANPREFIX=${PREFIX}/share CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes INSTALL_TARGET= install-strip USE_LDCONFIG= yes CFLAGS+= -Wno-error=return-type CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib CONFLICTS= minc-1* zh-tk pre-patch: @${RM} ${WRKSRC}/ac_config_aux/* @${RM} ${WRKSRC}/progs/minccalc/gram.[ch] @${RM} ${WRKSRC}/progs/mincgen/ncgentab.[ch] .include <bsd.port.mk> science/libminc/distinfo 0 → 100644 +3 −0 Original line number Diff line number Diff line TIMESTAMP = 1782248330 SHA256 (BIC-MNI-libminc-release-2.5.0_GH0.tar.gz) = 57d807e86a353a93024a8849f5e21e2abea4f09f0be934e1f538bdc2b02f8885 SIZE (BIC-MNI-libminc-release-2.5.0_GH0.tar.gz) = 823875 science/libminc/files/patch-CMakeLists.txt 0 → 100644 +10 −0 Original line number Diff line number Diff line --- CMakeLists.txt.orig 2026-04-24 04:00:26 UTC +++ CMakeLists.txt @@ -81,7 +81,6 @@ if(NOT LIBMINC_EXTERNALLY_CONFIGURED) # external packages find_package(ZLIB REQUIRED) - set(HDF5_NO_FIND_PACKAGE_CONFIG_FILE ON) find_package(HDF5 REQUIRED COMPONENTS C ) if(LIBMINC_USE_NIFTI) Loading
MOVED +1 −0 Original line number Diff line number Diff line Loading @@ -5376,3 +5376,4 @@ sysutils/signon-plugin-oauth2@qt5||2026-06-22|Unflavorize, remove Qt5 flavor sysutils/signon-plugin-oauth2@qt6|sysutils/signon-plugin-oauth2|2026-06-22|Unflavorize net-im/libaccounts-qt@qt5||2026-06-22|Unflavorize, remove Qt5 flavor net-im/libaccounts-qt@qt6|net-im/libaccounts-qt|2026-06-22|Unflavorize science/minc2|science/minc-tools|2026-06-24|Split into science/minc-tools and science/libminc
science/Makefile +2 −1 Original line number Diff line number Diff line Loading @@ -154,6 +154,7 @@ SUBDIR += libkml SUBDIR += liblinear SUBDIR += libmbd SUBDIR += libminc SUBDIR += libmsym SUBDIR += libnegf SUBDIR += liboglappth Loading Loading @@ -184,7 +185,7 @@ SUBDIR += medit SUBDIR += meep SUBDIR += metaphysicl SUBDIR += minc2 SUBDIR += minc-tools SUBDIR += mmdb2 SUBDIR += mmg SUBDIR += mmtf-cpp Loading
science/minc2/Makefile→science/libminc/Makefile +9 −26 Original line number Diff line number Diff line PORTNAME= minc PORTVERSION= 2.2.00 PORTNAME= libminc PORTVERSION= 2.5.0 DISTVERSIONPREFIX= release- PORTREVISION= 15 PORTEPOCH= 1 CATEGORIES= science biology PKGNAMESUFFIX= 2 MAINTAINER= ports@FreeBSD.org COMMENT= Medical Imaging NetCDF COMMENT= Core library and API of the MINC toolkit WWW= https://www.bic.mni.mcgill.ca/ServicesSoftware/MINC LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= nifticlib>0:science/nifticlib LIB_DEPENDS= libhdf5.so:science/hdf5 \ libnetcdf.so:science/netcdf RUN_DEPENDS= bash:shells/bash USES= cmake:testing localbase CMAKE_ON= LIBMINC_BUILD_SHARED_LIBS \ LIBMINC_MINC1_SUPPORT \ LIBMINC_USE_NIFTI LIBMINC_USE_SYSTEM_NIFTI USE_GITHUB= yes GH_ACCOUNT= BIC-MNI MAKE_JOBS_UNSAFE= yes USES= autoreconf bison gmake libtool perl5 shebangfix SHEBANG_FILES= progs/mincview/mincview GNU_CONFIGURE= yes GNU_CONFIGURE_MANPREFIX=${PREFIX}/share CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes INSTALL_TARGET= install-strip USE_LDCONFIG= yes CFLAGS+= -Wno-error=return-type CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib CONFLICTS= minc-1* zh-tk pre-patch: @${RM} ${WRKSRC}/ac_config_aux/* @${RM} ${WRKSRC}/progs/minccalc/gram.[ch] @${RM} ${WRKSRC}/progs/mincgen/ncgentab.[ch] .include <bsd.port.mk>
science/libminc/distinfo 0 → 100644 +3 −0 Original line number Diff line number Diff line TIMESTAMP = 1782248330 SHA256 (BIC-MNI-libminc-release-2.5.0_GH0.tar.gz) = 57d807e86a353a93024a8849f5e21e2abea4f09f0be934e1f538bdc2b02f8885 SIZE (BIC-MNI-libminc-release-2.5.0_GH0.tar.gz) = 823875
science/libminc/files/patch-CMakeLists.txt 0 → 100644 +10 −0 Original line number Diff line number Diff line --- CMakeLists.txt.orig 2026-04-24 04:00:26 UTC +++ CMakeLists.txt @@ -81,7 +81,6 @@ if(NOT LIBMINC_EXTERNALLY_CONFIGURED) # external packages find_package(ZLIB REQUIRED) - set(HDF5_NO_FIND_PACKAGE_CONFIG_FILE ON) find_package(HDF5 REQUIRED COMPONENTS C ) if(LIBMINC_USE_NIFTI)
