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* [Installing PhyloPyPruner](#installing_phylopypruner)
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* [Via pip](#pip_installation)
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* [Upgrading PhyloPyPruner](#ppp_upgrade)
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* [Removing PhyloPyPruner](#ppp_removal)
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* [Upgrading PhyloPyPruner](#ppp_upgrade)
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* [Removing PhyloPyPruner](#ppp_removal)
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* [Dependencies](#dependencies)
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* [Python Version](#python_version)
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* [Installing Matplotlib](#installing_matplotlib)
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The flag `--user` tells pip to only install the program for the current user. To install it for all users, simply remove the `--user` flag.
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### Upgrading PhyloPyPruner <a name="ppp_upgrade"></a>
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## Upgrading PhyloPyPruner <a name="ppp_upgrade"></a>
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If you want to upgrade to the latest version, use pip with the flag `--upgrade` like so:
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pip install --upgrade phylopypruner
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```
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### Removing PhyloPyPruner <a name="ppp_removal"></a>
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## Removing PhyloPyPruner <a name="ppp_removal"></a>
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To remove PhyloPyPruner from your system, use pip with the command `uninstall`:
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