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do not assume `app` is an App instance, support API usage

Hans-Christoph Steiner requested to merge eighthave/fdroidserver:more-api-fixes into master

When using fdroidserver methods as an API, the full setup might not have taken place. app instances can always just be a dict, the App class is mostly just a typing shortcut. This is incremental, it only affects a couple of functions in fdroidserver/update.py.

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