Fragmented & Duplicated called as Complete in full_table.tsv
Hi,
I'm running BUSCO version 4.0.2 in genome mode using viridiplantae_odb10 and I think it's collapsing fragmented and duplicated genes into complete in the full_table.tsv.
$ more short_summary.specific.viridiplantae_odb10.FILE.txt
# BUSCO version is: 4.0.2
# The lineage dataset is: viridiplantae_odb10 (Creation date: 2019-11-20, number of species: 57, number of BUSCOs: 425)
# Summarized benchmarking in BUSCO notation for file
# BUSCO was run in mode: genome
***** Results: *****
C:40.2%[S:40.0%,D:0.2%],F:17.4%,M:42.4%,n:425
171 Complete BUSCOs (C)
170 Complete and single-copy BUSCOs (S)
1 Complete and duplicated BUSCOs (D)
74 Fragmented BUSCOs (F)
180 Missing BUSCOs (M)
425 Total BUSCO groups searched
$ grep -c "Complete" full_table.tsv
246
$ grep -c "Dup" full_table.tsv
0
$ grep -c "Frag" full_table.tsv
0
$ grep -c "Miss" full_table.tsv
180
Do you know why this might happen?
Thanks, Erik
Edited by Erik Hanschen