CRITICAL:busco.BuscoRunner using busco v5.2.2
Hi busco,
I have installed busco v5.2.2 using conda and when I tried to run it, it gives me the following error:
2021-08-09 12:37:07 CRITICAL:busco.BuscoRunner Unhandled exception occurred: Traceback (most recent call last): File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/BuscoRunner.py", line 371, in run_analysis self.analysis.run_analysis() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/analysis/GenomeAnalysis.py", line 387, in run_analysis super().run_analysis() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/analysis/GenomeAnalysis.py", line 174, in run_analysis super().run_analysis() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/analysis/GenomeAnalysis.py", line 48, in run_analysis super().run_analysis() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/BuscoLogger.py", line 58, in wrapped_func self.retval = func(*args, **kwargs) File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/analysis/BuscoAnalysis.py", line 104, in run_analysis self.init_tools() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/analysis/GenomeAnalysis.py", line 381, in init_tools super().init_tools() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/analysis/GenomeAnalysis.py", line 168, in init_tools super().init_tools() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/analysis/GenomeAnalysis.py", line 55, in init_tools super().init_tools() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/analysis/Analysis.py", line 48, in init_tools super().init_tools() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/BuscoLogger.py", line 62, in wrapped_func self.retval = func(*args, **kwargs) File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/analysis/BuscoAnalysis.py", line 291, in init_tools self.hmmer_runner = HMMERRunner() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/busco_tools/hmmer.py", line 23, in init super().init() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/busco_tools/base.py", line 48, in init raise ToolException( busco.busco_tools.base.ToolException: hmmsearch tool cannot be found. Please check the 'path' and 'command' parameters provided in the config file. Do not include the command in the path!
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/BuscoRunner.py", line 126, in run self.runner.run_analysis() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/BuscoRunner.py", line 413, in run_analysis self.save_results() File "/users/sgr/miniconda3/envs/busco_env/lib/python3.9/site-packages/busco/BuscoRunner.py", line 339, in save_results ] = self.analysis.hmmer_runner.hmmer_results_lines AttributeError: 'NoneType' object has no attribute 'hmmer_results_lines'
2021-08-09 12:37:07 ERROR:busco.BuscoRunner BUSCO analysis failed !
I have checked that, for instance, the path to hmmsearch tool is ok and actually it is and that hmmsearch tool is properly installed and it is as well. Can you please help me with this?