Command '['/metaeuk/build/bin/metaeuk', '-h']' died with <Signals.SIGILL: 4>

Dear Colleague,

I try to run Busco from Docker. At my first try it failed issuing the log below. It looks like there is something wrong with the -h option of metaeuk which do not get the soft version.

Thanks for any help !

Johann

docker run -u $(id -u) -v $(pwd):/busco_wd ezlabgva/busco:v5.beta.1_cv1 busco -m genome -i /NGSrepository/amaizing/DNAg/WP3.1/NRGene/F2/F2.genome.fasta -l poales_odb10 -o F2.genome -c 46

INFO: ***** Start a BUSCO v5.beta.1 analysis, current time: 11/25/2020 14:30:18 ***** INFO: Configuring BUSCO with /busco/config/config.ini INFO: Mode is genome ERROR: Input file /NGSrepository/amaizing/DNAg/WP3.1/NRGene/F2/F2.genome.fasta does not exist ERROR: BUSCO analysis failed ! ERROR: Check the logs, read the user guide, and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues jjoets@jet:/local-home/abi/jjoets/amaizing2020/Busco2020$ cp /NGSrepository/amaizing/DNAg/WP3.1/NRGene/F2/F2.genome.fasta . jjoets@jet:/local-home/abi/jjoets/amaizing2020/Busco2020$ docker run -u $(id -u) -v $(pwd):/busco_wd ezlabgva/busco:v5.beta.1_cv1 busco -m genome -i F2.genome.fasta -l poales_odb10 -o F2.genome -c 46 INFO: ***** Start a BUSCO v5.beta.1 analysis, current time: 11/25/2020 14:31:02 ***** INFO: Configuring BUSCO with /busco/config/config.ini INFO: Mode is genome ERROR: A run with the name /busco_wd/F2.genome already exists... If you are sure you wish to overwrite existing files, please use the -f (force) option ERROR: BUSCO analysis failed ! ERROR: Check the logs, read the user guide, and check the BUSCO issue board on https://gitlab.com/ezlab/busco/issues jjoets@jet:/local-home/abi/jjoets/amaizing2020/Busco2020$ rm -rf F2.genome/ jjoets@jet:/local-home/abi/jjoets/amaizing2020/Busco2020$ docker run -u $(id -u) -v $(pwd):/busco_wd ezlabgva/busco:v5.beta.1_cv1 busco -m genome -i F2.genome.fasta -l poales_odb10 -o F2.genome -c 46 INFO: ***** Start a BUSCO v5.beta.1 analysis, current time: 11/25/2020 14:31:14 ***** INFO: Configuring BUSCO with /busco/config/config.ini INFO: Mode is genome INFO: Input file is /busco_wd/F2.genome.fasta INFO: Downloading information on latest versions of BUSCO data... INFO: Downloading file 'https://busco-data.ezlab.org/v4/data/lineages/poales_odb10.2020-08-05.tar.gz' INFO: Decompressing file '/busco_wd/busco_downloads/lineages/poales_odb10.tar.gz' CRITICAL: Unhandled exception occurred: Traceback (most recent call last): File "/usr/local/lib/python3.7/dist-packages/busco/run_BUSCO.py", line 222, in run_BUSCO busco_run.run_analysis() File "/usr/local/lib/python3.7/dist-packages/busco/BuscoRunner.py", line 48, in run_analysis self.analysis.run_analysis() File "/usr/local/lib/python3.7/dist-packages/busco/GenomeAnalysis.py", line 336, in run_analysis super().run_analysis() File "/usr/local/lib/python3.7/dist-packages/busco/GenomeAnalysis.py", line 160, in run_analysis super().run_analysis() File "/usr/local/lib/python3.7/dist-packages/busco/GenomeAnalysis.py", line 35, in run_analysis super().run_analysis() File "/usr/local/lib/python3.7/dist-packages/busco/BuscoLogger.py", line 51, in wrapped_func self.retval = func(*args, **kwargs) File "/usr/local/lib/python3.7/dist-packages/busco/BuscoAnalysis.py", line 86, in run_analysis self.init_tools() File "/usr/local/lib/python3.7/dist-packages/busco/GenomeAnalysis.py", line 332, in init_tools self.metaeuk_runner = MetaeukRunner() File "/usr/local/lib/python3.7/dist-packages/busco/BuscoTools.py", line 1717, in init super().init() File "/usr/local/lib/python3.7/dist-packages/busco/BuscoTools.py", line 61, in init self.version = self.get_version() File "/usr/local/lib/python3.7/dist-packages/busco/BuscoTools.py", line 1881, in get_version help_output = subprocess.check_output([self.cmd, "-h"], stderr=subprocess.STDOUT, shell=False) File "/usr/lib/python3.7/subprocess.py", line 411, in check_output **kwargs).stdout File "/usr/lib/python3.7/subprocess.py", line 512, in run output=stdout, stderr=stderr) subprocess.CalledProcessError: Command '['/metaeuk/build/bin/metaeuk', '-h']' died with <Signals.SIGILL: 4>.