Problems installing BUSCO with conda
Hi,
I have trouble installing BUSCO. I've tried to install BUSCO through conda several times the last days (first version 4.0.5, today version 4.0.6).
When creating a conda environment and installing BUSCO in the same command, conda is not able to find busco in any repository:
(base) [2020-04-10 14:56:09 ] $ conda create -n buscoenv -c conda-forge busco=4.0.6
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed
PackagesNotFoundError: The following packages are not available from current channels:
- busco=4.0.6
Current channels:
- https://conda.anaconda.org/conda-forge/linux-64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/linux-64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/linux-64
- https://repo.anaconda.com/pkgs/r/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
When first creating an environment in Anaconda Navigator GUI (I'm new to using the GUI), then installing busco, conda reports conflicts between incompatible packages:
In environment created with GUI, Python version 3.7.7
(buscoenv) C:\Users\username>conda install -c defaults -c bioconda -c conda-forge busco=4.0.6
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: |
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Package vc conflicts for:
python=3.7 -> vc[version='14.*|>=14,<15.0a0|>=14.1,<15.0a0']
Package hmmer conflicts for:
busco=4.0.6 -> hmmer[version='>=3.1b2']
Package vs2015_runtime conflicts for:
python=3.7 -> vs2015_runtime[version='>=14.16.27012,<15.0a0']
Package r-base conflicts for:
busco=4.0.6 -> r-base[version='>=3.6,<3.7.0a0']
Package prodigal conflicts for:
busco=4.0.6 -> prodigal
Package biopython conflicts for:
busco=4.0.6 -> biopython
Package sqlite conflicts for:
python=3.7 -> sqlite[version='>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.27.2,<4.0a0|>=3.28.0,<4.0a0|>=3.29.0,<4.0a0|>=3.30.1,<4.0a0|>=3.31.1,<4.0a0']
Package openssl conflicts for:
python=3.7 -> openssl[version='>=1.1.1a,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a']
Package pip conflicts for:
python=3.7 -> pip
Package python_abi conflicts for:
python=3.7 -> python_abi=[build=*_cp37m]
Package r-ggplot2 conflicts for:
busco=4.0.6 -> r-ggplot2[version='>=2.2.1']
Package augustus conflicts for:
busco=4.0.6 -> augustus=3.2.3
Package sepp conflicts for:
busco=4.0.6 -> sepp[version='>=4.3.10']
Package blast conflicts for:
busco=4.0.6 -> blast[version='>=2.2,<2.4']
Package findutils conflicts for:
busco=4.0.6 -> findutils
Can anyone help me out?'
Thanks!