Isuue with installing
Hi,
I'm trying to run BUSCO with my data, but I could not get past this error. I would appreciate any help regarding this.
jjs@jjs:/media/jjs/Data/ngs/busco/scripts$ python ./run_BUSCO.py ERROR No section [busco] found in /media/jjs/Data/ngs/busco/scripts/../config/config.ini. Please make sure both the file and this section exist, see userguide.
**The following are the paths **
jjs@jjs:/media/jjs/Data/ngs/busco/scripts$ which tblastn /usr/bin/tblastn
jjs@jjs:/media/jjs/Data/ngs/busco/scripts$ which hmmsearch /usr/bin/hmmsearch
jjs@jjs:/media/jjs/Data/ngs/busco/scripts$ which augustus /media/jjs/Data/ngs/Augustus/bin/augustus
jjs@jjs:/media/jjs/Data/ngs/busco/scripts$ which augustus etraining /media/jjs/Data/ngs/Augustus/bin/augustus /media/jjs/Data/ngs/Augustus/bin/etraining
jjs@jjs:/media/jjs/Data/ngs/busco/scripts$ which gff2gbSmallDNA.pl /media/jjs/Data/ngs/Augustus/scripts/gff2gbSmallDNA.pl
jjs@jjs:/media/jjs/Data/ngs/busco/scripts$ which R /usr/bin/R
and I had copied the config.ini.default to config.ini in the same folder and made the path changes
[tblastn]
path to tblastn
path = /usr/bin/
[makeblastdb]
path to makeblastdb
path = /usr/bin/
[augustus]
path to augustus
path = /media/jjs/Data/ngs/Augustus/bin/
[etraining]
path to augustus etraining
path = /media/jjs/Data/ngs/Augustus/bin/
path to augustus perl scripts, redeclare it for each new script
[gff2gbSmallDNA.pl] path = /media/jjs/Data/ngs/Augustus/scripts/ [new_species.pl] path = /media/jjs/Data/ngs/Augustus/scripts/ [optimize_augustus.pl] path = /media/jjs/Data/ngs/Augustus/scripts/
[hmmsearch]
path to HMMsearch executable
path = /usr/bin/
[Rscript]
path to Rscript, if you wish to use the plot tool
path = /usr/bin/