P

production

Implements Freesurfer's PETsurfers analysis pipeline, step 5. ROI Analysis, Setting Up Reference Regions for KM, and Apply Partial Volume Correction (uses mri_gtmpvc)

A dicom de-identification gear that de-identifies files in-place.

This is the gear version of the fw-dataset library, which runs fw-dataset on a project, with some additional processing options.

Flywheel Gear that curates files within a Flywheel project following the BIDS Specification

DICOM to NIfTI converter based on dcm2niix

De-identified export of a project/subject/session to another project in Flywheel.

CLI (Legacy)

Common code for parsing and de-identifying data of various types, including DICOM.

Detect and/or remove burn-in PII/PHI in DICOM images (based on Microsoft presidio library)

Motion correction for PET volumes / part of petsurfer pipeline

Flywheel CLI (beta)

Converts ROIs created in the Flywheel OHIF viewer to nifti files.

QA/CI - pre-commit hooks and Gitlab CI templates

Python base image with a common, basic tool-set

Flywheel fork of https://github.com/OHIF/Viewers

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages