P

production

Redact burned-in PHI/PII from DICOM images. Its used after running image-pii-detector on your images

Co-registration between PET and T1w for the PetSurfer pipeline

Clone gear rules, permissions, and/or dataviews to be applied to a destination project, or export the settings for import to another instance/project.

Detect and/or remove burn-in PII/PHI in DICOM images (based on Microsoft presidio library)

A generic python runner for utility gear

Parse and import file metadata into Flywheel (DICOM, NIfTI, PARREC, etc.)

Apply MONAI transforms to an input-file

Relabel acquisitions, sessions, and subjects for a project

This is the gear version of the fw-dataset library, which runs fw-dataset on a project, with some additional processing options.

A generalized file classifier

Flywheel Gear for the removal of facial structures via MiDeFace

Use oct-converter package to read in data from a variety of sources and convert to publicly-accessible formats (e.g., .jpg, .mp4)

OCT Quality Assessment. Three indexes are calculated: 1) mean and variance of the black region of the retinal image, 2) the slope of the image intensity measuring from the black region into the retina and 3) dynamic range of the retinal image.

Remove facial structures of MRI scans using PyDeface

Converts ROIs created in the Flywheel OHIF viewer to nifti files.

Flywheel gear to convert DICOM RTStruct to NIfTI