Commit 6afa1ad3 authored by Elad Noor's avatar Elad Noor

Update README.md with an example of how to run MDF

parent 7ada0b51
Pipeline #36639684 passed with stage
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......@@ -97,6 +97,21 @@ assigning reversibility to reactions we recommend this measure because 1:2
reactions are much "easier" to reverse than reactions with 1:1 or 2:2 reactions.
You can see the paper linked above for more information.
### Example of pathway analysis using Max-min Driving Force:
First, download an example configuration file (in SBtab format):
```
curl https://gitlab.com/elad.noor/equilibrator-api/raw/master/equilibrator_api/tests/EMP_glycolysis_full_SBtab.tsv > example.tsv
```
Then inside the python3 shell:
```python
from equilibrator_api import Pathway
pp = Pathway.from_sbtab('example.tsv')
mdf_res = pp.calc_mdf()
print('MDF = ', mdf_res.mdf)
mdf_res.mdf_plot.show()
```
## Dependencies:
- python 3.6
- numpy (preferably >= 1.15.0)
......
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