Commit 3d24ab71 authored by Peter Lin's avatar Peter Lin
Browse files

add pipelines

parent 92080d50
{
"created": "2020-01-12T13:22:22.694612Z",
"digest": "a75583f50a6a3f49b57faed294885f554290c7dfac022d2f53314d30b18345f2",
"id": "ta1-perspecta-lupimfa_uu4_SPECT_s1_linear",
"inputs": [
{
"name": "inputs"
}
],
"outputs": [
{
"data": "steps.7.produce",
"name": "output predictions"
}
],
"schema": "https://metadata.datadrivendiscovery.org/schemas/v0/pipeline.json",
"steps": [
{
"arguments": {
"inputs": {
"data": "inputs.0",
"type": "CONTAINER"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "0d5c62917bbfd451ad277226c850b58086ba45fb3a3159dcdfe47cb299ebf2dc",
"id": "f31f8c1f-d1c5-43e5-a4b2-2ae4a761ef2e",
"name": "Denormalize datasets",
"python_path": "d3m.primitives.data_transformation.denormalize.Common",
"version": "0.2.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.0.produce",
"type": "CONTAINER"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "b1ac4776f0e916f707a6b6a74f3a36c56ea2eb37c6a255d986faf21855446073",
"id": "4b42ce1e-9b98-4a25-b68e-fad13311eb65",
"name": "Extract a DataFrame from a Dataset",
"python_path": "d3m.primitives.data_transformation.dataset_to_dataframe.Common",
"version": "0.3.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.1.produce",
"type": "CONTAINER"
}
},
"hyperparams": {
"C_gridsearch": {
"data": {
"encoding": "pickle",
"value": "gANHwBAAAAAAAABHQDSAAAAAAABHP+zMzMzMzM2HcQAu"
},
"type": "VALUE"
},
"exclude_input_columns": {
"data": [
0
],
"type": "VALUE"
},
"gamma_gridsearch": {
"data": {
"encoding": "pickle",
"value": "gANHwBAAAAAAAABHQDSAAAAAAABHP+zMzMzMzM2HcQAu"
},
"type": "VALUE"
},
"regressor_type": {
"data": "linear",
"type": "VALUE"
},
"use_scree": {
"data": true,
"type": "VALUE"
},
"use_semantic_types": {
"data": true,
"type": "VALUE"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "abe078a87eea9056cf201c56c74c286d1c5706807ba46aa5d49b0df3d3764ee2",
"id": "5361ebf6-9e5a-4ce5-b73c-3babf12f1941",
"name": "lupi_mfa.lupi_mfa.LupiMFA",
"python_path": "d3m.primitives.data_preprocessing.lupi_mfa.lupi_mfa.LupiMFA",
"version": "v6.0.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.2.produce",
"type": "CONTAINER"
}
},
"hyperparams": {
"semantic_types": {
"data": [
"https://metadata.datadrivendiscovery.org/types/TrueTarget"
],
"type": "VALUE"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "f828f4fbd3ce894ef26a264e53ac98c79d689b653b0eda497b069e42ddfebef4",
"id": "4503a4c6-42f7-45a1-a1d4-ed69699cf5e1",
"name": "Extracts columns by semantic type",
"python_path": "d3m.primitives.data_transformation.extract_columns_by_semantic_types.Common",
"version": "0.3.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.1.produce",
"type": "CONTAINER"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "631c29b4a7853a396053e6226a230d4efe0926ccc6e73417b886ca9a62c469ef",
"id": "d510cb7a-1782-4f51-b44c-58f0236e47c7",
"name": "Parses strings into their types",
"python_path": "d3m.primitives.data_transformation.column_parser.Common",
"version": "0.6.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.2.produce",
"type": "CONTAINER"
}
},
"hyperparams": {
"semantic_types": {
"data": [
"https://metadata.datadrivendiscovery.org/types/Attribute"
],
"type": "VALUE"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "f828f4fbd3ce894ef26a264e53ac98c79d689b653b0eda497b069e42ddfebef4",
"id": "4503a4c6-42f7-45a1-a1d4-ed69699cf5e1",
"name": "Extracts columns by semantic type",
"python_path": "d3m.primitives.data_transformation.extract_columns_by_semantic_types.Common",
"version": "0.3.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.5.produce",
"type": "CONTAINER"
},
"outputs": {
"data": "steps.3.produce",
"type": "CONTAINER"
}
},
"hyperparams": {
"exclude_inputs_columns": {
"data": [
0
],
"type": "VALUE"
},
"max_depth": {
"data": {
"case": "int",
"value": 10
},
"type": "VALUE"
},
"n_estimators": {
"data": 100,
"type": "VALUE"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "fae487ee779444b98ab0f7f61d8e67b9eb0fd9e5876b27644c8b1fc08a3d04c3",
"id": "1dd82833-5692-39cb-84fb-2455683075f3",
"name": "sklearn.ensemble.forest.RandomForestClassifier",
"python_path": "d3m.primitives.classification.random_forest.SKlearn",
"version": "2019.6.7"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.6.produce",
"type": "CONTAINER"
},
"reference": {
"data": "steps.1.produce",
"type": "CONTAINER"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "e1f343aff9cb0a0dba9b69037aeefe71a5e8da2c9becd67f838130a394a7d4e6",
"id": "8d38b340-f83f-4877-baaa-162f8e551736",
"name": "Construct pipeline predictions output",
"python_path": "d3m.primitives.data_transformation.construct_predictions.Common",
"version": "0.3.0"
},
"type": "PRIMITIVE"
}
]
}
\ No newline at end of file
{
"created": "2020-01-12T13:12:31.428242Z",
"digest": "852e248443a583683d5744e166ff7ed2c5c8c3ed2a8be56717ed1cddaba5b0d1",
"id": "ta1-perspecta-lupimfa_uu6_hepatitis_s1_linear",
"inputs": [
{
"name": "inputs"
}
],
"outputs": [
{
"data": "steps.7.produce",
"name": "output predictions"
}
],
"schema": "https://metadata.datadrivendiscovery.org/schemas/v0/pipeline.json",
"steps": [
{
"arguments": {
"inputs": {
"data": "inputs.0",
"type": "CONTAINER"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "0d5c62917bbfd451ad277226c850b58086ba45fb3a3159dcdfe47cb299ebf2dc",
"id": "f31f8c1f-d1c5-43e5-a4b2-2ae4a761ef2e",
"name": "Denormalize datasets",
"python_path": "d3m.primitives.data_transformation.denormalize.Common",
"version": "0.2.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.0.produce",
"type": "CONTAINER"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "b1ac4776f0e916f707a6b6a74f3a36c56ea2eb37c6a255d986faf21855446073",
"id": "4b42ce1e-9b98-4a25-b68e-fad13311eb65",
"name": "Extract a DataFrame from a Dataset",
"python_path": "d3m.primitives.data_transformation.dataset_to_dataframe.Common",
"version": "0.3.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.1.produce",
"type": "CONTAINER"
}
},
"hyperparams": {
"C_gridsearch": {
"data": {
"encoding": "pickle",
"value": "gANHwBAAAAAAAABHQDSAAAAAAABHP+zMzMzMzM2HcQAu"
},
"type": "VALUE"
},
"exclude_input_columns": {
"data": [
0
],
"type": "VALUE"
},
"gamma_gridsearch": {
"data": {
"encoding": "pickle",
"value": "gANHwBAAAAAAAABHQDSAAAAAAABHP+zMzMzMzM2HcQAu"
},
"type": "VALUE"
},
"regressor_type": {
"data": "linear",
"type": "VALUE"
},
"use_scree": {
"data": true,
"type": "VALUE"
},
"use_semantic_types": {
"data": true,
"type": "VALUE"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "abe078a87eea9056cf201c56c74c286d1c5706807ba46aa5d49b0df3d3764ee2",
"id": "5361ebf6-9e5a-4ce5-b73c-3babf12f1941",
"name": "lupi_mfa.lupi_mfa.LupiMFA",
"python_path": "d3m.primitives.data_preprocessing.lupi_mfa.lupi_mfa.LupiMFA",
"version": "v6.0.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.2.produce",
"type": "CONTAINER"
}
},
"hyperparams": {
"semantic_types": {
"data": [
"https://metadata.datadrivendiscovery.org/types/TrueTarget"
],
"type": "VALUE"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "f828f4fbd3ce894ef26a264e53ac98c79d689b653b0eda497b069e42ddfebef4",
"id": "4503a4c6-42f7-45a1-a1d4-ed69699cf5e1",
"name": "Extracts columns by semantic type",
"python_path": "d3m.primitives.data_transformation.extract_columns_by_semantic_types.Common",
"version": "0.3.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.1.produce",
"type": "CONTAINER"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "631c29b4a7853a396053e6226a230d4efe0926ccc6e73417b886ca9a62c469ef",
"id": "d510cb7a-1782-4f51-b44c-58f0236e47c7",
"name": "Parses strings into their types",
"python_path": "d3m.primitives.data_transformation.column_parser.Common",
"version": "0.6.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.2.produce",
"type": "CONTAINER"
}
},
"hyperparams": {
"semantic_types": {
"data": [
"https://metadata.datadrivendiscovery.org/types/Attribute"
],
"type": "VALUE"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "f828f4fbd3ce894ef26a264e53ac98c79d689b653b0eda497b069e42ddfebef4",
"id": "4503a4c6-42f7-45a1-a1d4-ed69699cf5e1",
"name": "Extracts columns by semantic type",
"python_path": "d3m.primitives.data_transformation.extract_columns_by_semantic_types.Common",
"version": "0.3.0"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.5.produce",
"type": "CONTAINER"
},
"outputs": {
"data": "steps.3.produce",
"type": "CONTAINER"
}
},
"hyperparams": {
"exclude_inputs_columns": {
"data": [
0
],
"type": "VALUE"
},
"max_depth": {
"data": {
"case": "int",
"value": 10
},
"type": "VALUE"
},
"n_estimators": {
"data": 100,
"type": "VALUE"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "fae487ee779444b98ab0f7f61d8e67b9eb0fd9e5876b27644c8b1fc08a3d04c3",
"id": "1dd82833-5692-39cb-84fb-2455683075f3",
"name": "sklearn.ensemble.forest.RandomForestClassifier",
"python_path": "d3m.primitives.classification.random_forest.SKlearn",
"version": "2019.6.7"
},
"type": "PRIMITIVE"
},
{
"arguments": {
"inputs": {
"data": "steps.6.produce",
"type": "CONTAINER"
},
"reference": {
"data": "steps.1.produce",
"type": "CONTAINER"
}
},
"outputs": [
{
"id": "produce"
}
],
"primitive": {
"digest": "e1f343aff9cb0a0dba9b69037aeefe71a5e8da2c9becd67f838130a394a7d4e6",
"id": "8d38b340-f83f-4877-baaa-162f8e551736"