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Welcome to the MRtrix user documentation!
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High Performance Computing (HPC) Tutorials
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*MRtrix* provides a large suite of tools for image processing, analysis and visualisation, with a focus on the analysis of white matter using diffusion-weighted MRI. Features include the estimation of fibre orientation distributions using constrained spherical deconvolution ([Tournier2004]_; [Tournier2007]_; [Jeurissen2014]_), visualisation of these via directionally-encoded colour maps ([Dhollander2015a]_) and panchromatic sharpening ([Dhollander2015b]_), a probabilisitic streamlines algorithm for fibre tractography of white matter ([Tournier2012]_), fixel-based analysis of apparent fibre density and fibre cross-section ([Raffelt2012]_; [Raffelt2015]_; [Raffelt2017]_), quantitative structural connectivity analysis ([Smith2012]_; [Smith2013]_; [Smith2015]_; [Christiaens2015]_), and non-linear spatial registration of fibre orientation distribution images ([Raffelt2011]_).
