Small genome viruses analysis

Hi! @ccoclet ,

I loved the design of your pipeline and how smoothly it runs!

I am Research Scientist at GBRC, Gandhinagar, India. I am working on detection of zoonotic spillovers across the wetlands of India, through viral metagenomics.

I analyzed my data with MVP and it gave me great results however I observed a limitation in tools such as vRhyme that only bin size >2kb is allowed for down streaming analysis. This seems to be a bit concern for dealing with viruses which are of <2kb size such as Rotavirus.

Do you think is there a way to address that issue in this pipeline? I have previously used Concut for binning purpose, which accommodates viruse of size <2kb.

Thankyou!