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Stuck at Executing Module 03 (Clustering)

I have successfully installed mvip and then ran the code.. everything has ran successfully.. but while executing Module 03 at Step 6A:Generating FASTA file containing protein sequences from filtered (relaxed mode) viruses... it seems it is not processing further.. I have attached the screenshot. I have ran the code on 8th May. SO almost 6 days have passed..

When I started the code it immediately game this error but after that it ran successfully upto the Step 6A that I mentioned.

(mvip) [souvik_p1@ndwor06 MVP_analysis]$ mvip MVP_03_do_clustering -i /data/sata_data/home/souvik_p1/sewage_analysis/analysis/trimmomatic_out                             /MVP_analysis/ -m /data/sata_data/home/souvik_p1/sewage_analysis/analysis/trimmomatic_out/MVP_analysis/Metadata.txt --threads 84

Start Time: 2025-05-08 14:55:21

Step 1: Generating the merge geNomad and CheckV output tables...
/data/sata_data/home/souvik_p1/miniconda3/envs/mvip/lib/python3.8/site-packages/mvip/modules/MVP_03_do_clustering.py:130: DtypeWarning: Colum                             ns (12) have mixed types. Specify dtype option on import or set low_memory=False.
  unfiltered_quality_summary_df = pd.read_csv(unfiltered_quality_summary_file, sep='\t')
/data/sata_data/home/souvik_p1/miniconda3/envs/mvip/lib/python3.8/site-packages/mvip/modules/MVP_03_do_clustering.py:130: DtypeWarning: Colum                             ns (12) have mixed types. Specify dtype option on import or set low_memory=False.
  unfiltered_quality_summary_df = pd.read_csv(unfiltered_quality_summary_file, sep='\t')
/data/sata_data/home/souvik_p1/miniconda3/envs/mvip/lib/python3.8/site-packages/mvip/modules/MVP_03_do_clustering.py:130: DtypeWarning: Colum                             ns (12) have mixed types. Specify dtype option on import or set low_memory=False.
  unfiltered_quality_summary_df = pd.read_csv(unfiltered_quality_summary_file, sep='\t')
/data/sata_data/home/souvik_p1/miniconda3/envs/mvip/lib/python3.8/site-packages/mvip/modules/MVP_03_do_clustering.py:130: DtypeWarning: Colum                             ns (12) have mixed types. Specify dtype option on import or set low_memory=False.
  unfiltered_quality_summary_df = pd.read_csv(unfiltered_quality_summary_file, sep='\t')
/data/sata_data/home/souvik_p1/miniconda3/envs/mvip/lib/python3.8/site-packages/mvip/modules/MVP_03_do_clustering.py:130: DtypeWarning: Colum                             ns (12) have mixed types. Specify dtype option on import or set low_memory=False.
  unfiltered_quality_summary_df = pd.read_csv(unfiltered_quality_summary_file, sep='\t')
/data/sata_data/home/souvik_p1/miniconda3/envs/mvip/lib/python3.8/site-packages/mvip/modules/MVP_03_do_clustering.py:130: DtypeWarning: Colum                             ns (12) have mixed types. Specify dtype option on import or set low_memory=False.

Please help me in this.. should it be taking this much time as I have 116 shotgun samples processing.

Module_3