No output from segmentation with demo dataset and demo notebook
Hello,
All functions produced output as expected except for the segmentation notebook cell which simply runs with no output. I am running Windows 10, 8 core i7, 64GB RAM, GTX1650. Here is my environment list: (mplexable) C:\Users\smith6jt>conda list
packages in environment at C:\Users\smith6jt\AppData\Local\anaconda3\envs\mplexable:
Name Version Build Channel
abseil-cpp 20211102.0 h0e60522_0 conda-forge aicsimageio 4.13.0 pypi_0 pypi aicspylibczi 3.1.2 pypi_0 pypi aiobotocore 2.5.4 pypi_0 pypi aiohttp 3.9.1 py38h91455d4_0 conda-forge aioitertools 0.11.0 pypi_0 pypi aiosignal 1.3.1 pyhd8ed1ab_0 conda-forge annotated-types 0.6.0 pypi_0 pypi anyio 4.2.0 py38haa95532_0 aom 3.6.0 hd77b12b_0 argon2-cffi 21.3.0 pyhd3eb1b0_0 argon2-cffi-bindings 21.2.0 py38h2bbff1b_0 arrow-cpp 11.0.0 ha81ea56_2 asciitree 0.3.3 pypi_0 pypi asttokens 2.0.5 pyhd3eb1b0_0 async-lru 2.0.4 py38haa95532_0 async-timeout 4.0.3 pyhd8ed1ab_0 conda-forge attrs 23.1.0 py38haa95532_0 aws-c-common 0.6.8 h8ffe710_0 conda-forge aws-c-event-stream 0.1.6 hd77b12b_6 aws-checksums 0.1.11 h9653816_12 conda-forge aws-sdk-cpp 1.8.185 hd77b12b_1 babel 2.11.0 py38haa95532_0 backcall 0.2.0 pyhd3eb1b0_0 backoff 2.2.1 pypi_0 pypi beautifulsoup4 4.12.2 py38haa95532_0 bioformats_jar 2020.5.27 pyhd8ed1ab_0 conda-forge blas 1.0 mkl bleach 4.1.0 pyhd3eb1b0_0 blosc 1.21.5 hdccc3a2_0 conda-forge bokeh 2.4.3 pyhd8ed1ab_3 conda-forge boost-cpp 1.84.0 h6f18f0d_0 conda-forge botocore 1.31.17 pypi_0 pypi brotli 1.0.9 h2bbff1b_7 brotli-bin 1.0.9 h2bbff1b_7 brotli-python 1.0.9 py38hd77b12b_7 bzip2 1.0.8 hcfcfb64_5 conda-forge c-ares 1.26.0 hcfcfb64_0 conda-forge ca-certificates 2023.11.17 h56e8100_0 conda-forge cachetools 5.3.2 pyhd8ed1ab_0 conda-forge cellpose 2.2.3 pyhd8ed1ab_0 conda-forge certifi 2023.11.17 pyhd8ed1ab_0 conda-forge cffi 1.16.0 py38h2bbff1b_0 cfitsio 3.470 h2bbff1b_7 charls 2.2.0 h6c2663c_0 charset-normalizer 2.0.4 pyhd3eb1b0_0 click 8.1.7 win_pyh7428d3b_0 conda-forge cloudpickle 3.0.0 pyhd8ed1ab_0 conda-forge colorama 0.4.6 py38haa95532_0 comm 0.2.1 pyhd8ed1ab_0 conda-forge contourpy 1.1.1 pypi_0 pypi cryptography 41.0.7 py38h89fc84f_0 cudatoolkit 10.2.89 he40447d_12 conda-forge cycler 0.12.1 pyhd8ed1ab_0 conda-forge cytoolz 0.12.2 py38h91455d4_1 conda-forge dask 2023.5.0 pyhd8ed1ab_0 conda-forge dask-core 2023.5.0 pyhd8ed1ab_0 conda-forge dask-image 0.6.0 pyhd3eb1b0_0 dav1d 1.2.1 hcfcfb64_0 conda-forge debugpy 1.6.7 py38hd77b12b_0 decorator 5.1.1 pyhd3eb1b0_0 defusedxml 0.7.1 pyhd3eb1b0_0 deprecated 1.2.14 pypi_0 pypi distributed 2023.5.0 pyhd8ed1ab_0 conda-forge eigen 3.4.0 h91493d7_0 conda-forge elementpath 4.1.5 pypi_0 pypi exceptiongroup 1.2.0 py38haa95532_0 executing 0.8.3 pyhd3eb1b0_0 fasteners 0.19 pypi_0 pypi fastremap 1.14.1 pypi_0 pypi ffmpeg 4.2.3 ha925a31_0 conda-forge filelock 3.13.1 py38haa95532_0 fonttools 4.47.2 py38h91455d4_0 conda-forge freetype 2.12.1 hdaf720e_2 conda-forge frozenlist 1.4.1 py38h91455d4_0 conda-forge fsspec 2023.6.0 pypi_0 pypi gettext 0.21.1 h5728263_0 conda-forge gflags 2.2.2 ha925a31_1004 conda-forge giflib 5.2.1 h64bf75a_3 conda-forge glib 2.78.3 h12be248_0 conda-forge glib-tools 2.78.3 h12be248_0 conda-forge glog 0.5.0 h4797de2_0 conda-forge gmpy2 2.1.2 py38h7f96b67_0 google-api-core 2.15.0 pyhd8ed1ab_0 conda-forge google-auth 2.27.0 pyhca7485f_0 conda-forge google-cloud-core 2.4.1 pyhd8ed1ab_0 conda-forge google-cloud-storage 2.14.0 pyhca7485f_0 conda-forge google-crc32c 1.1.2 py38h40ab01b_5 conda-forge google-resumable-media 2.7.0 pyhd8ed1ab_0 conda-forge googleapis-common-protos 1.62.0 pyhd8ed1ab_0 conda-forge grpc-cpp 1.48.2 hfe90ff0_1 grpcio 1.48.2 py38hfe90ff0_1 gst-plugins-base 1.18.5 h9e645db_0 gstreamer 1.18.5 hd78058f_0 hdf5 1.10.6 nompi_he0bbb20_101 conda-forge icc_rt 2022.1.0 h6049295_2 icu 58.2 ha925a31_3 idna 3.4 py38haa95532_0 imagecodecs 2023.3.16 pypi_0 pypi imageio 2.33.1 pyh8c1a49c_0 conda-forge importlib-metadata 6.11.0 pypi_0 pypi importlib_metadata 7.0.1 hd3eb1b0_0 importlib_resources 6.1.1 py38haa95532_1 intel-openmp 2023.1.0 h59b6b97_46320 ipykernel 6.28.0 py38haa95532_0 ipython 8.12.2 py38haa95532_0 ipywidgets 8.1.1 pyhd8ed1ab_0 conda-forge jedi 0.18.1 py38haa95532_1 jgo 1.0.5 pyhd8ed1ab_0 conda-forge jinja2 3.1.2 py38haa95532_0 jmespath 1.0.1 pypi_0 pypi joblib 1.3.2 pyhd8ed1ab_0 conda-forge jpeg 9e hcfcfb64_3 conda-forge jpype1 1.4.1 py38h59b6b97_0 json5 0.9.6 pyhd3eb1b0_0 jsonschema 4.19.2 py38haa95532_0 jsonschema-specifications 2023.7.1 py38haa95532_0 jupyter-lsp 2.2.0 py38haa95532_0 jupyter_client 8.6.0 py38haa95532_0 jupyter_core 5.5.0 py38haa95532_0 jupyter_events 0.8.0 py38haa95532_0 jupyter_server 2.10.0 py38haa95532_0 jupyter_server_terminals 0.4.4 py38haa95532_1 jupyterlab 4.0.8 py38haa95532_0 jupyterlab_pygments 0.1.2 py_0 jupyterlab_server 2.25.1 py38haa95532_0 jupyterlab_widgets 3.0.9 pyhd8ed1ab_0 conda-forge kiwisolver 1.4.5 py38hb1fd069_1 conda-forge krb5 1.21.2 heb0366b_0 conda-forge lazy-loader 0.3 pypi_0 pypi lcms2 2.12 h83e58a3_0 lerc 3.0 hd77b12b_0 libaec 1.1.2 h63175ca_1 conda-forge libavif 0.11.1 h2bbff1b_0 libboost 1.84.0 h65993cd_0 conda-forge libboost-devel 1.84.0 h91493d7_0 conda-forge libboost-headers 1.84.0 h57928b3_0 conda-forge libbrotlicommon 1.0.9 h2bbff1b_7 libbrotlidec 1.0.9 h2bbff1b_7 libbrotlienc 1.0.9 h2bbff1b_7 libclang 12.0.0 default_h627e005_2 libcrc32c 1.1.2 h0e60522_0 conda-forge libcurl 8.5.0 hd5e4a3a_0 conda-forge libdeflate 1.17 h2bbff1b_1 libffi 3.4.4 hd77b12b_0 libglib 2.78.3 h16e383f_0 conda-forge libiconv 1.17 hcfcfb64_2 conda-forge libogg 1.3.4 h8ffe710_1 conda-forge libpng 1.6.39 h19919ed_0 conda-forge libprotobuf 3.20.3 h12be248_0 conda-forge libsodium 1.0.18 h62dcd97_0 libssh2 1.11.0 h7dfc565_0 conda-forge libthrift 0.15.0 h532d1ae_1 conda-forge libtiff 4.5.1 hd77b12b_0 libuv 1.44.2 h2bbff1b_0 libvorbis 1.3.7 h0e60522_0 conda-forge libwebp 1.3.2 hcfcfb64_1 conda-forge libwebp-base 1.3.2 hcfcfb64_0 conda-forge libxml2 2.10.4 h0ad7f3c_1 libxslt 1.1.37 h2bbff1b_1 libzlib 1.2.13 hcfcfb64_5 conda-forge libzopfli 1.0.3 h0e60522_0 conda-forge llvmlite 0.41.1 pypi_0 pypi locket 1.0.0 pyhd8ed1ab_0 conda-forge lxml 4.9.4 pypi_0 pypi lz4 4.3.3 py38hb6d8784_0 conda-forge lz4-c 1.9.4 hcfcfb64_0 conda-forge markupsafe 2.1.3 py38h2bbff1b_0 matplotlib 3.7.4 pypi_0 pypi matplotlib-base 3.5.3 py38h3268a40_2 conda-forge matplotlib-inline 0.1.6 py38haa95532_0 maven 3.8.1 haa95532_0 mistune 2.0.4 py38haa95532_0 mkl 2023.1.0 h6b88ed4_46358 mkl-service 2.4.0 py38h2bbff1b_1 mkl_fft 1.3.8 py38h2bbff1b_0 mkl_random 1.2.4 py38h59b6b97_0 mpc 1.1.0 h7edee0f_1 mpfr 4.0.2 h62dcd97_1 mpir 3.0.0 hec2e145_1 mplexable 1.0.3 pypi_0 pypi mpmath 1.3.0 py38haa95532_0 msgpack-python 1.0.7 py38hb1fd069_0 conda-forge multidict 6.0.4 py38h91455d4_1 conda-forge munkres 1.1.4 pyh9f0ad1d_0 conda-forge natsort 8.4.0 pyhd8ed1ab_0 conda-forge nbclient 0.8.0 py38haa95532_0 nbconvert 7.10.0 py38haa95532_0 nbformat 5.9.2 py38haa95532_0 nest-asyncio 1.5.6 py38haa95532_0 networkx 3.1 py38haa95532_0 ninja 1.11.1 h91493d7_0 conda-forge notebook-shim 0.2.3 py38haa95532_0 numba 0.58.1 py38hd77b12b_0 numcodecs 0.12.1 pypi_0 pypi numpy 1.23.5 pypi_0 pypi numpy-base 1.24.3 py38h8a87ada_1 ome-types 0.4.5 pypi_0 pypi ome-zarr 0.8.3 pypi_0 pypi opencv 4.6.0 py38hf11a4ad_3 opencv-python 4.9.0.80 pypi_0 pypi opencv-python-headless 4.9.0.80 pypi_0 pypi openjdk 11.0.13 h2bbff1b_0 openjpeg 2.5.0 ha2aaf27_2 conda-forge openssl 3.2.0 hcfcfb64_1 conda-forge opentelemetry-api 1.21.0 pypi_0 pypi opentelemetry-exporter-otlp-proto-common 1.21.0 pypi_0 pypi opentelemetry-exporter-otlp-proto-http 1.21.0 pypi_0 pypi opentelemetry-proto 1.21.0 pypi_0 pypi opentelemetry-sdk 1.21.0 pypi_0 pypi opentelemetry-semantic-conventions 0.42b0 pypi_0 pypi orc 1.7.4 h623e30f_1 overrides 7.4.0 py38haa95532_0 packaging 23.1 py38haa95532_0 pandas 2.0.3 py38hf08cf0d_1 conda-forge pandocfilters 1.5.0 pyhd3eb1b0_0 parso 0.8.3 pyhd3eb1b0_0 partd 1.4.1 pyhd8ed1ab_0 conda-forge pcre2 10.42 h17e33f8_0 conda-forge pickleshare 0.7.5 pyhd3eb1b0_1003 pillow 10.2.0 pypi_0 pypi pims 0.6.1 pyhd8ed1ab_1 conda-forge pip 23.3.1 py38haa95532_0 pkgutil-resolve-name 1.3.10 py38haa95532_1 platformdirs 3.10.0 py38haa95532_0 pooch 1.8.0 pyhd8ed1ab_0 conda-forge prometheus_client 0.14.1 py38haa95532_0 prompt-toolkit 3.0.43 py38haa95532_0 protobuf 4.25.2 pypi_0 pypi psutil 5.9.0 py38h2bbff1b_0 pure_eval 0.2.2 pyhd3eb1b0_0 pyarrow 11.0.0 py38h790e06d_1 pyasn1 0.5.1 pyhd8ed1ab_0 conda-forge pyasn1-modules 0.3.0 pyhd8ed1ab_0 conda-forge pyconify 0.1.6 pyhd8ed1ab_0 conda-forge pycparser 2.21 pyhd3eb1b0_0 pydantic 2.5.3 pypi_0 pypi pydantic-compat 0.1.2 pypi_0 pypi pydantic-core 2.14.6 pypi_0 pypi pygments 2.15.1 py38haa95532_1 pyopenssl 23.2.0 py38haa95532_0 pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge pyqtgraph 0.13.3 pyhd8ed1ab_0 conda-forge pysocks 1.7.1 py38haa95532_0 python 3.8.18 h1aa4202_0 python-dateutil 2.8.2 pyhd3eb1b0_0 python-fastjsonschema 2.16.2 py38haa95532_0 python-json-logger 2.0.7 py38haa95532_0 python-tzdata 2023.4 pyhd8ed1ab_0 conda-forge python_abi 3.8 2_cp38 conda-forge pytorch 1.8.2 py3.8_cuda10.2_cudnn7_0 pytorch-lts pytorch-mutex 1.0 cpu pytorch pytz 2023.3.post1 py38haa95532_0 pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge pywavelets 1.4.1 py38he7056a7_1 conda-forge pywin32 305 py38h2bbff1b_0 pywinpty 2.0.10 py38h5da7b33_0 pyyaml 6.0.1 py38h2bbff1b_0 pyzmq 25.1.2 py38hd77b12b_0 qt-main 5.15.2 he8e5bd7_7 qt-webengine 5.15.9 h5bd16bc_7 qtpy 2.4.1 pyhd8ed1ab_0 conda-forge qtwebkit 5.212 h2bbfb41_5 re2 2022.04.01 h0e60522_0 conda-forge referencing 0.30.2 py38haa95532_0 requests 2.31.0 py38haa95532_0 resource-backed-dask-array 0.1.0 pypi_0 pypi rfc3339-validator 0.1.4 py38haa95532_0 rfc3986-validator 0.1.1 py38haa95532_0 roifile 2023.5.12 pypi_0 pypi rpds-py 0.10.6 py38h062c2fa_0 rsa 4.9 pyhd8ed1ab_0 conda-forge s3fs 2023.6.0 pypi_0 pypi scikit-image 0.21.0 pypi_0 pypi scikit-learn 1.3.2 py38h4f736e5_2 conda-forge scipy 1.10.1 pypi_0 pypi scyjava 1.9.1 pyhd8ed1ab_0 conda-forge seaborn 0.13.2 pypi_0 pypi send2trash 1.8.2 py38haa95532_0 setuptools 68.2.2 py38haa95532_0 six 1.16.0 pyhd3eb1b0_1 slicerator 1.1.0 pyhd8ed1ab_0 conda-forge snappy 1.1.10 hfb803bf_0 conda-forge sniffio 1.3.0 py38haa95532_0 sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge soupsieve 2.5 py38haa95532_0 sqlite 3.41.2 h2bbff1b_0 stack_data 0.2.0 pyhd3eb1b0_0 superqt 0.6.1 pyh9208f05_0 conda-forge sympy 1.12 py38haa95532_0 synapseclient 4.0.0 pypi_0 pypi tbb 2021.8.0 h59b6b97_0 tblib 3.0.0 pyhd8ed1ab_0 conda-forge terminado 0.17.1 py38haa95532_0 threadpoolctl 3.2.0 pyha21a80b_0 conda-forge tifffile 2023.2.28 pyhd8ed1ab_0 conda-forge tinycss2 1.2.1 py38haa95532_0 tk 8.6.13 h5226925_1 conda-forge tomli 2.0.1 py38haa95532_0 toolz 0.12.1 pyhd8ed1ab_0 conda-forge tornado 6.3.3 py38h2bbff1b_0 tqdm 4.66.1 pyhd8ed1ab_0 conda-forge traitlets 5.7.1 py38haa95532_0 typing-extensions 4.9.0 py38haa95532_1 typing_extensions 4.9.0 py38haa95532_1 ucrt 10.0.22621.0 h57928b3_0 conda-forge unicodedata2 15.1.0 py38h91455d4_0 conda-forge urllib3 1.26.18 py38haa95532_0 utf8proc 2.6.1 h2bbff1b_0 vc 14.2 h21ff451_1 vc14_runtime 14.38.33130 h82b7239_18 conda-forge vs2015_runtime 14.38.33130 hcb4865c_18 conda-forge wcwidth 0.2.5 pyhd3eb1b0_0 webencodings 0.5.1 py38_1 websocket-client 0.58.0 py38haa95532_4 wheel 0.41.2 py38haa95532_0 widgetsnbextension 4.0.9 pyhd8ed1ab_0 conda-forge win_inet_pton 1.1.0 py38haa95532_0 winpty 0.4.3 4 wrapt 1.16.0 pypi_0 pypi xarray 2023.1.0 pypi_0 pypi xmlschema 3.0.1 pypi_0 pypi xsdata 24.1 pypi_0 pypi xz 5.4.5 h8cc25b3_0 yaml 0.2.5 he774522_0 yarl 1.9.4 py38h91455d4_0 conda-forge zarr 2.15.0 pypi_0 pypi zeromq 4.3.5 hd77b12b_0 zfp 1.0.1 h63175ca_0 conda-forge zict 3.0.0 pyhd8ed1ab_0 conda-forge zipp 3.17.0 py38haa95532_0 zlib 1.2.13 hcfcfb64_5 conda-forge zstd 1.5.5 h12be248_0 conda-forge
Any idea what could be the problem?