Commit 1f4b8c22 authored by bue's avatar bue 🐮

@ experiment_py : smoketest update

parent 755102a8
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{"1": {"endpoint": {"DAPI_chebi51231": {"batch": "400P025", "catalogNu": "PK-CA707-40043", "conc": 500, "concUnit": "ng_per_mL_uo0000275", "cultType": "batch", "externalId": "LSM-45203", "manufacture": "PromoKine_Own", "micChannel": 1, "recordSet": "ss-4v1", "timeBegin": 0, "timeEnd": 60, "timeUnit": "minute_uo0000031", "wavelengthNm": 395}, "EdU_pubchemcid472172": {"batch": "1711807", "catalogNu": "C10357", "conc": 1, "concUnit": "mmolar_uo0000063", "cultType": "batch", "externalId": "LSM-45204", "manufacture": "Life_Technologies_Own", "micChannel": 4, "recordSet": "ss-4v1", "timeBegin": 0, "timeEnd": 60, "timeUnit": "minute_uo0000031", "wavelengthNm": 647}, "KRT19_P08727": {"batch": "2651994", "catalogNu": "MAB3238", "conc": 3.333, "concUnit": "ug_per_mL_uo0000274", "cultType": "batch", "externalId": "LAR-1098", "hostOrganism": "Mouse_10090", "isotype": "IgG1_kappa_chain_Own", "manufacture": "EMD_Millipore_Own", "micChannel": 3, "recordSet": "ss-4v1", "timeBegin": 0, "timeEnd": 18, "timeUnit": "hour_uo0000032", "wavelengthNm": 555}, "KRT5_P13647": {"batch": "D14FF01222", "catalogNu": "905501", "conc": 1.25, "concUnit": "ug_per_mL_uo0000274", "cultType": "batch", "externalId": "LAR-1099", "hostOrganism": "Rabbit_9986", "isotype": "IgG_baobao0002610", "manufacture": "BioLegend_Own", "micChannel": 2, "recordSet": "ss-4v1", "timeBegin": 0, "timeEnd": 18, "timeUnit": "hour_uo0000032", "wavelengthNm": 488}, "Mouse_10090-IgG_baobao0002610": {"batch": "1736967", "catalogNu": "A-31570", "conc": null, "concUnit": null, "cultType": "batch", "dye": "Alexa_Fluor_555_UA", "externalId": "LAR-1100", "hostOrganism": "Donkey_9793", "isotype": "IgG_baobao0002610", "manufacture": "Life_Technologies_Own", "micChannel": 3, "recordSet": "ss-4v1", "targetOrganism": "Mouse_10090", "timeBegin": null, "timeEnd": null, "timeUnit": null, "wavelengthNm": 555}, "Rabbit_9986-IgG_baobao0002610": {"batch": "1754421", "catalogNu": "A-21206", "conc": null, "concUnit": null, "cultType": "batch", "dye": "Alexa_Fluor_488_UA", "externalId": "LAR-1101", "hostOrganism": "Donkey_9793", "isotype": "IgG_baobao0002610", "manufacture": "Life_Technologies_Own", "micChannel": 2, "recordSet": "ss-4v1", "targetOrganism": "Rabbit_9986", "timeBegin": null, "timeEnd": null, "timeUnit": null, "wavelengthNm": 488}}, "iSpot": 1, "iWell": 1, "iixii": "1_1x1_1", "ixi": "1x1", "perturbation": null, "sample": null, "sxi": "Ax1"}, "acid": "acpipe_acjson-ss-4v1_ac.json", "log": null, "runid": "ss-4v1", "runtype": "acpipe_acjson", "spotlayout": [1], "welllayout": "1x1"}
\ No newline at end of file
{"1": {"endpoint": {"DAPI_chebi51231": {"batch": "400P025", "catalogNu": "PK-CA707-40043", "conc": 500, "concUnit": "ng_per_mL_uo0000275", "cultType": "batch", "externalId": "LSM-45203", "manufacture": "PromoKine_Own", "micChannel": 1, "recordSet": "ss-4v1", "timeBegin": 0, "timeEnd": 60, "timeUnit": "minute_uo0000031", "wavelengthNm": 395}, "EdU_pubchemcid472172": {"batch": "1711807", "catalogNu": "C10357", "conc": 1, "concUnit": "mmolar_uo0000063", "cultType": "batch", "externalId": "LSM-45204", "manufacture": "Life_Technologies_Own", "micChannel": 4, "recordSet": "ss-4v1", "timeBegin": 0, "timeEnd": 60, "timeUnit": "minute_uo0000031", "wavelengthNm": 647}, "KRT19_P08727": {"batch": "2651994", "catalogNu": "MAB3238", "conc": 3.333, "concUnit": "ug_per_mL_uo0000274", "cultType": "batch", "externalId": "LAR-1098", "hostOrganism": "Mouse_10090", "isotype": "IgG1_kappa_chain_Own", "manufacture": "EMD_Millipore_Own", "micChannel": 3, "recordSet": "ss-4v1", "timeBegin": 0, "timeEnd": 18, "timeUnit": "hour_uo0000032", "wavelengthNm": 555}, "KRT5_P13647": {"batch": "D14FF01222", "catalogNu": "905501", "conc": 1.25, "concUnit": "ug_per_mL_uo0000274", "cultType": "batch", "externalId": "LAR-1099", "hostOrganism": "Rabbit_9986", "isotype": "IgG_baobao0002610", "manufacture": "BioLegend_Own", "micChannel": 2, "recordSet": "ss-4v1", "timeBegin": 0, "timeEnd": 18, "timeUnit": "hour_uo0000032", "wavelengthNm": 488}, "Mouse_10090-IgG_baobao0002610": {"batch": "1736967", "catalogNu": "A-31570", "conc": null, "concUnit": "ug_per_mL_uo0000274", "cultType": "batch", "dye": "Alexa_Fluor_555_UA", "externalId": "LAR-1100", "hostOrganism": "Donkey_9793", "isotype": "IgG_baobao0002610", "manufacture": "Life_Technologies_Own", "micChannel": 3, "recordSet": "ss-4v1", "targetOrganism": "Mouse_10090", "timeBegin": null, "timeEnd": null, "timeUnit": "hour_uo0000032", "wavelengthNm": 555}, "Rabbit_9986-IgG_baobao0002610": {"batch": "1754421", "catalogNu": "A-21206", "conc": null, "concUnit": "ug_per_mL_uo0000274", "cultType": "batch", "dye": "Alexa_Fluor_488_UA", "externalId": "LAR-1101", "hostOrganism": "Donkey_9793", "isotype": "IgG_baobao0002610", "manufacture": "Life_Technologies_Own", "micChannel": 2, "recordSet": "ss-4v1", "targetOrganism": "Rabbit_9986", "timeBegin": null, "timeEnd": null, "timeUnit": "hour_uo0000032", "wavelengthNm": 488}}, "iSpot": 1, "iWell": 1, "iixii": "1_1x1_1", "ixi": "1x1", "perturbation": null, "sample": null, "sxi": "Ax1"}, "acid": "annot_acaxis-ss-4v1_ac.json", "log": null, "runid": "ss-4v1", "runtype": "annot_acaxis", "spotlayout": [1], "welllayout": "1x1"}
\ No newline at end of file
{"1": {"endpoint": {"CellMask_Orange_Own": {"batch": "1694679", "catalogNu": "H32713", "conc": 2, "concUnit": "ng_per_mL_uo0000275", "cultType": "batch", "externalId": "LOR-1011", "manufacture": "Life_Technologies_Own", "micChannel": 3, "recordSet": "ss-Iv1", "timeBegin": 0, "timeEnd": 30, "timeUnit": "minute_uo0000031", "wavelengthNm": 555}, "DAPI_chebi51231": {"batch": "400P025", "catalogNu": "PK-CA707-40043", "conc": 500, "concUnit": "ng_per_mL_uo0000275", "cultType": "batch", "externalId": "LSM-45203", "manufacture": "PromoKine_Own", "micChannel": 1, "recordSet": "ss-Iv1", "timeBegin": 0, "timeEnd": 60, "timeUnit": "minute_uo0000031", "wavelengthNm": 395}, "EdU_pubchemcid472172": {"batch": "1793759", "catalogNu": "C10357", "conc": 1, "concUnit": "mmolar_uo0000063", "cultType": "batch", "externalId": "LSM-45204", "manufacture": "Life_Technologies_Own", "micChannel": 4, "recordSet": "ss-Iv1", "timeBegin": 0, "timeEnd": 60, "timeUnit": "minute_uo0000031", "wavelengthNm": 647}}, "iSpot": 1, "iWell": 1, "iixii": "1_1x1_1", "ixi": "1x1", "perturbation": null, "sample": null, "sxi": "Ax1"}, "acid": "acpipe_acjson-ss-Iv1_ac.json", "log": null, "runid": "ss-Iv1", "runtype": "acpipe_acjson", "spotlayout": [1], "welllayout": "1x1"}
\ No newline at end of file
{"1": {"endpoint": {"CellMask_Orange_Own": {"batch": "1694679", "catalogNu": "H32713", "conc": 2, "concUnit": "ng_per_mL_uo0000275", "cultType": "batch", "externalId": "LOR-1011", "manufacture": "Life_Technologies_Own", "micChannel": 3, "recordSet": "ss-Iv1", "timeBegin": 0, "timeEnd": 30, "timeUnit": "minute_uo0000031", "wavelengthNm": 555}, "DAPI_chebi51231": {"batch": "400P025", "catalogNu": "PK-CA707-40043", "conc": 500, "concUnit": "ng_per_mL_uo0000275", "cultType": "batch", "externalId": "LSM-45203", "manufacture": "PromoKine_Own", "micChannel": 1, "recordSet": "ss-Iv1", "timeBegin": 0, "timeEnd": 60, "timeUnit": "minute_uo0000031", "wavelengthNm": 395}, "EdU_pubchemcid472172": {"batch": "1793759", "catalogNu": "C10357", "conc": 1, "concUnit": "mmolar_uo0000063", "cultType": "batch", "externalId": "LSM-45204", "manufacture": "Life_Technologies_Own", "micChannel": 4, "recordSet": "ss-Iv1", "timeBegin": 0, "timeEnd": 60, "timeUnit": "minute_uo0000031", "wavelengthNm": 647}}, "iSpot": 1, "iWell": 1, "iixii": "1_1x1_1", "ixi": "1x1", "perturbation": null, "sample": null, "sxi": "Ax1"}, "acid": "annot_acaxis-ss-Iv1_ac.json", "log": null, "runid": "ss-Iv1", "runtype": "annot_acaxis", "spotlayout": [1], "welllayout": "1x1"}
\ No newline at end of file
......@@ -23,7 +23,7 @@ import acpipe_acjson.acjson as ac
d_acjson = ac.acbuild(
s_welllayout='1x1',
s_runid='ss-100v1',
s_runtype='acpipe_acjson'
s_runtype='annot_acaxis'
)
# reagent: antibody1-KRT14_P02533-Mouse_10090-IgG3_Own-abcamOwn_ab7800_GR2659241
......@@ -101,11 +101,11 @@ d_record[s_gent].update({'manufacture': 'Life_Technologies_Own'})
d_record[s_gent].update({'catalogNu': 'A-21127'})
d_record[s_gent].update({'batch': '1719632'})
d_record[s_gent].update({'conc': None})
d_record[s_gent].update({'concUnit': None})
d_record[s_gent].update({'concUnit': 'ug_per_mL_uo0000274'})
d_record[s_gent].update({'cultType': 'batch'})
d_record[s_gent].update({'timeBegin': None})
d_record[s_gent].update({'timeEnd': None})
d_record[s_gent].update({'timeUnit': None})
d_record[s_gent].update({'timeUnit': 'hour_uo0000032'})
d_record[s_gent].update({'recordSet': 'ss-100v1'})
d_record[s_gent].update({'externalId': 'LAR-1104'})
d_acjson = ac.acfuseaxisrecord(
......@@ -132,11 +132,11 @@ d_record[s_gent].update({'manufacture': 'Life_Technologies_Own'})
d_record[s_gent].update({'catalogNu': 'A-21151'})
d_record[s_gent].update({'batch': '1759017'})
d_record[s_gent].update({'conc': None})
d_record[s_gent].update({'concUnit': None})
d_record[s_gent].update({'concUnit': 'ug_per_mL_uo0000274'})
d_record[s_gent].update({'cultType': 'batch'})
d_record[s_gent].update({'timeBegin': None})
d_record[s_gent].update({'timeEnd': None})
d_record[s_gent].update({'timeUnit': None})
d_record[s_gent].update({'timeUnit': 'hour_uo0000032'})
d_record[s_gent].update({'recordSet': 'ss-100v1'})
d_record[s_gent].update({'externalId': 'LAR-1105'})
d_acjson = ac.acfuseaxisrecord(
......
......@@ -23,7 +23,7 @@ import acpipe_acjson.acjson as ac
d_acjson = ac.acbuild(
s_welllayout='1x1',
s_runid='ss-1v1',
s_runtype='acpipe_acjson'
s_runtype='annot_acaxis'
)
# reagent: cstain-CellMask_Orange_Own-LifeTechnologiesOwn_H32713_1694679
......
......@@ -23,7 +23,7 @@ import acpipe_acjson.acjson as ac
d_acjson = ac.acbuild(
s_welllayout='1x1',
s_runid='ss-2noH3v1',
s_runtype='acpipe_acjson'
s_runtype='annot_acaxis'
)
# reagent: antibody1-FBL_P22087-Mouse_10090-IgG1_Own-BioLegendOwn_905001_E12BF00222
......@@ -72,11 +72,11 @@ d_record[s_gent].update({'manufacture': 'Life_Technologies_Own'})
d_record[s_gent].update({'catalogNu': 'A-31570'})
d_record[s_gent].update({'batch': '1692911'})
d_record[s_gent].update({'conc': None})
d_record[s_gent].update({'concUnit': None})
d_record[s_gent].update({'concUnit': 'ug_per_mL_uo0000274'})
d_record[s_gent].update({'cultType': 'batch'})
d_record[s_gent].update({'timeBegin': None})
d_record[s_gent].update({'timeEnd': None})
d_record[s_gent].update({'timeUnit': None})
d_record[s_gent].update({'timeUnit': 'hour_uo0000032'})
d_record[s_gent].update({'recordSet': 'ss-2noH3v1'})
d_record[s_gent].update({'externalId': 'LAR-1108'})
d_acjson = ac.acfuseaxisrecord(
......
......@@ -23,7 +23,7 @@ import acpipe_acjson.acjson as ac
d_acjson = ac.acbuild(
s_welllayout='1x1',
s_runid='ss-3v4',
s_runtype='acpipe_acjson'
s_runtype='annot_acaxis'
)
# reagent: antibody1-KRT19_P08727-Mouse_10090-IgG1_kappa_chain_Own-EMDMilliporeOwn_MAB3238_2651994
......@@ -101,11 +101,11 @@ d_record[s_gent].update({'manufacture': 'Life_Technologies_Own'})
d_record[s_gent].update({'catalogNu': 'A-31570'})
d_record[s_gent].update({'batch': '1692911'})
d_record[s_gent].update({'conc': None})
d_record[s_gent].update({'concUnit': None})
d_record[s_gent].update({'concUnit': 'ug_per_mL_uo0000274'})
d_record[s_gent].update({'cultType': 'batch'})
d_record[s_gent].update({'timeBegin': None})
d_record[s_gent].update({'timeEnd': None})
d_record[s_gent].update({'timeUnit': None})
d_record[s_gent].update({'timeUnit': 'hour_uo0000032'})
d_record[s_gent].update({'recordSet': 'ss-3v4'})
d_record[s_gent].update({'externalId': 'LAR-1108'})
d_acjson = ac.acfuseaxisrecord(
......@@ -132,11 +132,11 @@ d_record[s_gent].update({'manufacture': 'Life_Technologies_Own'})
d_record[s_gent].update({'catalogNu': 'A-21206'})
d_record[s_gent].update({'batch': '1674651'})
d_record[s_gent].update({'conc': None})
d_record[s_gent].update({'concUnit': None})
d_record[s_gent].update({'concUnit': 'ug_per_mL_uo0000274'})
d_record[s_gent].update({'cultType': 'batch'})
d_record[s_gent].update({'timeBegin': None})
d_record[s_gent].update({'timeEnd': None})
d_record[s_gent].update({'timeUnit': None})
d_record[s_gent].update({'timeUnit': 'hour_uo0000032'})
d_record[s_gent].update({'recordSet': 'ss-3v4'})
d_record[s_gent].update({'externalId': 'LAR-1109'})
d_acjson = ac.acfuseaxisrecord(
......
......@@ -23,7 +23,7 @@ import acpipe_acjson.acjson as ac
d_acjson = ac.acbuild(
s_welllayout='1x1',
s_runid='ss-4v1',
s_runtype='acpipe_acjson'
s_runtype='annot_acaxis'
)
# reagent: antibody1-KRT19_P08727-Mouse_10090-IgG1_kappa_chain_Own-EMDMilliporeOwn_MAB3238_2651994
......@@ -101,11 +101,11 @@ d_record[s_gent].update({'manufacture': 'Life_Technologies_Own'})
d_record[s_gent].update({'catalogNu': 'A-31570'})
d_record[s_gent].update({'batch': '1736967'})
d_record[s_gent].update({'conc': None})
d_record[s_gent].update({'concUnit': None})
d_record[s_gent].update({'concUnit': 'ug_per_mL_uo0000274'})
d_record[s_gent].update({'cultType': 'batch'})
d_record[s_gent].update({'timeBegin': None})
d_record[s_gent].update({'timeEnd': None})
d_record[s_gent].update({'timeUnit': None})
d_record[s_gent].update({'timeUnit': 'hour_uo0000032'})
d_record[s_gent].update({'recordSet': 'ss-4v1'})
d_record[s_gent].update({'externalId': 'LAR-1100'})
d_acjson = ac.acfuseaxisrecord(
......@@ -132,11 +132,11 @@ d_record[s_gent].update({'manufacture': 'Life_Technologies_Own'})
d_record[s_gent].update({'catalogNu': 'A-21206'})
d_record[s_gent].update({'batch': '1754421'})
d_record[s_gent].update({'conc': None})
d_record[s_gent].update({'concUnit': None})
d_record[s_gent].update({'concUnit': 'ug_per_mL_uo0000274'})
d_record[s_gent].update({'cultType': 'batch'})
d_record[s_gent].update({'timeBegin': None})
d_record[s_gent].update({'timeEnd': None})
d_record[s_gent].update({'timeUnit': None})
d_record[s_gent].update({'timeUnit': 'hour_uo0000032'})
d_record[s_gent].update({'recordSet': 'ss-4v1'})
d_record[s_gent].update({'externalId': 'LAR-1101'})
d_acjson = ac.acfuseaxisrecord(
......
......@@ -23,7 +23,7 @@ import acpipe_acjson.acjson as ac
d_acjson = ac.acbuild(
s_welllayout='1x1',
s_runid='ss-Iv1',
s_runtype='acpipe_acjson'
s_runtype='annot_acaxis'
)
# reagent: cstain-CellMask_Orange_Own-LifeTechnologiesOwn_H32713_1694679
......
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