@ man_tutorial.md : evolution (b08eb412) · Commits · bIOtransistor / annot

man/man_tutorial.md

+44 −1

Original line number	Diff line number	Diff line
		@@ -342,8 +342,46 @@ python3 on your computer and an additional python3 library called
		to `json.dump(d_acjson, f_acjson, indent=4, sort_keys=True)` to get better
		human readable output. However, the resulting file will as well take
		more disk space then a file without indent.
		The resulting acjson file will look like this:
		```
		{
		"1": {
		"endpoint": null,
		"iSpot": 1,
		"iWell": 1,
		"iixii": "1_1x1_1",
		"ixi": "1x1",
		"perturbation": {
		"lapatinib_chebi49603": {
		"batch": "not_available",
		"catalogNu": "S1028",
		"conc": 750,
		"concUnit": "nmolar_uo0000065",
		"cultType": "batch",
		"externalId": "LSM-1051",
		"manufacture": "Selleck_Own",
		"recordSet": "ds-lapatinib_750nM_v1",
		"timeBegin": 18,
		"timeEnd": 90,
		"timeUnit": "hour_uo0000032"
		}
		},
		"sample": null,
		"sxi": "Ax1"
		},
		"acid": "annot_acaxis-ds-lapatinib_750nM_v1_ac.json",
		"log": "from the bricks",
		"runid": "ds-lapatinib_750nM_v1",
		"runtype": "annot_acaxis",
		"spotlayout": [
		1
		],
		"welllayout": "1x1"
		}
		```

		1. to upload the generated acjson file

		1. click the cyan `Set_of_Perturbation` link.
		1. then click the `ds-lapatinib750nmv1` link.
		1. then click the `Browse…` button.
		@@ -354,6 +392,11 @@ python3 on your computer and an additional python3 library called
		`upload/acaxis/annot_acaxis-ds-lapatinib_750nM_v1_ac.json`. click this link.
		1. the uploaded json file should open in the browser. Use your
		`browser’s back arrow` to go back to the perturbation set table.
		1. optional: install a json viewer addon in your browser, as described in
		HowTo json files and youe web browser. Then click again the
		`upload/acaxis/annot_acaxis-ds-lapatinib_750nM_v1_ac.json` link
		in the `Acjson file` column. The file should now appear nicely rendered.


		1. now let's check the uploaded acjson against the brick content it was generated from.