read_block returns wrong image for czi images when retrieving reduced size
hi,
when trying to read a whole CZI image at a reduced size, an erroneous image is returned.
test_image: https://drive.google.com/file/d/1-EL1lBJr54AGrDuSiZI2xe7biNqb2Rxs/view?usp=sharing
code snippet how to reproduce the problem:
import cv2
import slideio
path = 'zeiss.czi'
slide = slideio.open_slide(path, driver='CZI')
scene = slide.get_scene(0)
img = scene.read_block(size=(scene.size[0]//2, scene.size[1]//2))
cv2.imwrite("/home/tom/img.jpg", img)
however, the actual image should look like:
(this is just a screenshot, so the resolution is not correct...)
slideio version: 1.0.2.
Furthermore, I've got questions how slideio handles reading such large images:
- does the czi format has some pyramidal structure for efficient retrieving the image at a lower resolution?
- does slideio even support that?
- is it possible to check if a CZI file contains such a pyramidal structure using slideio?
BR, Thomas
Edited by Thomas Ebner
