-
v3.1.2
# CHANGELOG ## v3.1.2 [2024-04-09] ### Changed #### Ecoli * updated pathorules * updated stx databases #### Listeria: * more lissero reporting #### Database Updates * pubmlst * amrfinder * bakta * plasmid database: plsdb ### Added #### Plasmidblaster: * Summed blast over all contigs summary_plasmidblaster_persubject_filtered = "results/summary/summary_plasmidblaster_persubject_filtered.tsv", summary_plasmidblaster_persubject_allbesthits = "results/summary/summary_plasmidblaster_persubject_allbesthits.tsv", summary_plasmidblaster_persubject_nonredundant = "results/summary/summary_plasmidblaster_persubject_nonredundant.tsv" * in report aggregated over contigs #### Bacillus * Transition to btyper3 databases, * NEW pesticidal proteins, * mesopsychro with signature from bakta #### Staphyloccus * sccmec class via CGE * sccmec class via staphopia #### bakta summary * new results/summary/summary_bakta.tsv ### Deprecated * prokka deprecated * legacy report deprecated
-
-