Update with new features: * ConFindr analysis * Kraken2 on assembly * mlst for allele coverage * JSON aggregation of results * sample QC via quantile thresholds * qc-colored report * single, centralized conda env * docker integration
Update with new features: * ConFindr analysis * Kraken2 on assembly * mlst for allele coverage * JSON aggregation of results * sample QC via quantile thresholds * qc-colored report * single, centralized conda env * docker integration