Plimbo_Runner does not show any output
I have just downloaded PLIMBO, and I apologise if the issue I am facing is due to my lack of knowledge, but I don't see any output of the cells that I am running. When I execute the following code:
sim = PlimboRunner(worm_model = model_key, fn_config = None, head_frags = [0], tail_frags = [4]) sim.simRNAi(RNAi_vect = blnkRNAi, RNAi_tags = blnkRNAi, params = param_o, run_time_init = 3600*168, run_time_sim = 3600*168, run_time_step = 60, run_time_sample = 25.0, run_time_reinit = 0.0, xscale = 1.0, verbose = True, new_mesh = False, save_dir = 'sim_1D', reset_clims = True, animate = False, plot = True, plot_type = ['Markovplot','Hexplot'], ani_type = 'Triplot', save_harness = False, harness_type='1D', fsize = [(18,12), (18,12)])
Jupyter Notebook replies this:
Creating 1D mesh... Initializing parameters and variables... Successfully generated model! Successfully completed init of model! Successfully completed sim of model! Plotting init of base for run 0 ... Plotting init of base for run 0 ... Plotting sim of base for run 0 ... Plotting sim of base for run 0 ... ----------------
And that is it. Is the output being generated into a different file? Do I have incorrect dependencies or something else causing this? Help would be appreciated, thanks.