Commit f98c065e authored by Cecil Curry's avatar Cecil Curry

Instructions finalized.

Installation and usage instructions have now been finalized,
following the release of the first (and presumably only)
stable release of PLIMBO.
parent cc3c1a1a
......@@ -40,7 +40,6 @@ PLIMBO currently supports **Linux**, **macOS**, and **Windows** out-of-the-box:
- [\ *Windows*\ ] Emulate **Ubuntu Linux** via the `Windows Subsystem for Linux
(WSL) <WSL_>`__. [#windows_not]_
- Install the **Python 3.x** [#python2_not]_ (e.g., 3.6) variant of Anaconda_.
- Install `Jupyter Notebook`_.
- Open a **Bash terminal.** [#terminal]_
- Run the following commands.
......@@ -60,16 +59,13 @@ PLIMBO currently supports **Linux**, **macOS**, and **Windows** out-of-the-box:
.. code-block:: console
mkdir ~/PLIMBO &&
cd ~/PLIMBO &&
curl -o plimbo.tar.gz &&
tar -xvzf plimbo.tar.gz
curl -o plimbo.tar.gz && tar -xvzf plimbo.tar.gz
- Install **PLIMBO.**
.. code-block:: console
sudo ln -s plimbo "$(python3 -c "from distutils.sysconfig import get_python_lib; print(get_python_lib())")/"
sudo ln -s plimbo-v0.0.1/plimbo "$(python3 -c "from distutils.sysconfig import get_python_lib; print(get_python_lib())")/"
.. [#windows_not]
The `Windows Subsystem for Linux (WSL) <WSL_>`__ and hence PLIMBO itself
......@@ -102,10 +98,11 @@ PLIMBO currently supports **Linux**, **macOS**, and **Windows** out-of-the-box:
To use the Planaria Interface for Modeling Body Organization (PLIMBO), open the
installed ``~/PLIMBO/Plimbo_Runner.ipynb`` file with `Jupyter Notebook`_. This
file provides all main functions of PLIMBO in a convenient format, complete
with detailed documentation.
To use PLIMBO, open the
`"plimbo-0.0.1/plimbo/Plimbo_Runner.ipynb" file extracted above <notebook_>`__
with `Jupyter Notebook`_, which comes preinstalled with Anaconda_. This notebook
serves as a high-level interface to the PLIMBO ecosystem, complete with detailed
......@@ -154,6 +151,8 @@ PLIMBO is open-source software `released <license_>`__ under the permissive
.. _license:
.. _notebook:
.. _project:
.. _testing:
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