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Tristan/symlinks and staging

Tristan Van Berkom requested to merge tristan/symlinks-and-staging into master

This branch includes two separate fixes, they are grouped together in this MR to avoid merge conflicts as they touch the same code.

  • Ensure that real path directories are created at staging times, in the case that some chunks install symlinks to directories which they do not create
  • Fat warning with hints when files are missing in the split manifests (see commit message for better detail)

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