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GUI add Window Types

See merge request !2343

Disallow attaching calculator from database row

See merge request !2614

for security reasons, do not allow attaching calculators from databases.  Doing so allows someone to craft a database such that the restored calculator would execute arbitrary code when used.

use crystal_coordinates in nspin=2

See merge request !2589

FIX: VASP Doc Links Broken

See merge request !2600

FIX: __path__ usage in test/conftest.py

Closes #1026

See merge request !2606

Allow Reading and Writing XSF with origin and span_vec

See merge request !2594

Fix for issue #1015

See merge request !2604

Ensure tangent_mag in ASENEBMethod is never 0 (prevents division by zero)

See merge request !2590

jsonio: Do not dictionaries while encoding

See merge request !2613

Bugfix and tests of optimizer/trajectory handling subtleties

See merge request !2610

test that we write the expected number of images to trajectory.  Test that irun() yields before the first step, as intended.  Test that a Trajectory object without atoms object is correctly written to during an optimization (fails as of this commit)

DOC: Adds pytest-mock to optional requirements

See merge request ase/ase!2603

fix for pyamg regression in issue #1022

Closes #1022

See merge request !2602

Merge remote-tracking branch 'kasperwestman/add-install-reqs-documentation' into add-install-reqs-documentation

This reverts commit 27b6958c.