Fix update pubmed ids in ELLA database
Background
The current procedure for updating the pubmed ids (see below) seems not to be compatible with ELLA recent versions.
- Clone the ELLA repository (https://gitlab.com/alleles/ella)
- Copy pubmed_ids.txt into the ELLA-folder
- make build; make dev; make shell
- ella-cli references fetch pubmed_ids.txt (this will take some time)
- Import the file created from the previous step to TSD (references_YYMMDD.txt)
Finally, deposit the references in the ELLA database:
- /tsd/p22/data/durable/production/ella/ops/prod-cli.sh
- ella-cli deposit references
Need to fix this in ELLA and update the procedure if the fix changes it.
Implementation
TBD 1.
Edited by Ksenia Lavrichenko