Add analysis with non-coding RNAs
Background
To test import and analysis of non-coding RNAs from the new gene panel builder (see ella#2192 (closed)), we need a test analysis with non-coding RNAs, including some variants that will not be filtered.
Implementation
Add a test analysis with "ncRNA" in the name, based on a control sample that includes the following genes and spiked variants:
Genes
HGNC symbol | HGNC id |
---|---|
RNU4ATAC | 34016 |
TERC | 11727 |
RMRP | 10031 |
SNORD118 | 32952 |
Gene panel
Spiked variants
Gene | HGVSc | VCF (hg19) |
---|---|---|
RNU4ATAC | NR_023343.1:n.30G>A | 2-122288485-G-A |
TERC | NR_001566.1:n.319G>A | 3-169482530-C-T |
RMRP | NR_003051.3:n.263G>T | 9-35657753-C-A |
SNORD118 | NR_033294.2:n.72A>G | 17-8076835-T-C |
Edited by Morten C. Eike