Commit 5d1cfa3a authored by akdel's avatar akdel

renamed to denoise

parent df5d024f
......@@ -14,7 +14,7 @@ pip install .
## Test with toy data
```shell script
OptiSpeed ./data/molecules.bnx --first_score=0.8 --second_score=0.75 --output_filename=test_output.tsv --combine_sparse=True
OptiSpeed ./data/molecules_test.bnx --first_score=0.8 --second_score=0.75 --output_filename=test_output.tsv --combine_sparse=True
OptiSpeed-denoise ./data/molecules.npy --first_score=0.8 --second_score=0.75 --output_filename=denoised_molecules.npy
OptiSpeed ./data/denoised_molecules.bnx --first_score=0.8 --second_score=0.75 --output_filename=test_output.tsv --combine_sparse=True
```
\ No newline at end of file
......@@ -13,4 +13,4 @@ setup(name='OptiMap',
"bin/OptiSpeed-denoise"],
packages=['OptiMap', "OptiMap/OptiSpeed"],
install_requires=["sqlalchemy", "numpy", "numba", "scipy", "intervaltree",
"matplotlib", "cython", "Simple-LSH", "fire", "ray"])
"matplotlib", "cython", "Simple-LSH", "fire", "ray==0.8.6"])
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