Installation for Mac: compile.sh example file
Hi,
I have installed SoFiA-2 on a Mac OSX 15.3.1. I had to modify the compile.sh slightly. I attach it here in case you find it useful.
Cheers, Carmen
#!/bin/sh
# ____________________________________________________________________ #
# #
# SoFiA 2 (compile.sh) - Source Finding Application #
# Copyright (C) 2025 The SoFiA 2 Authors #
# ____________________________________________________________________ #
# #
# Address: Tobias Westmeier #
# ICRAR M468 #
# The University of Western Australia #
# 35 Stirling Highway #
# Crawley WA 6009 #
# Australia #
# #
# E-mail: tobias.westmeier [at] uwa.edu.au #
# ____________________________________________________________________ #
# #
# This program is free software: you can redistribute it and/or modify #
# it under the terms of the GNU General Public License as published by #
# the Free Software Foundation, either version 3 of the License, or #
# (at your option) any later version. #
# #
# This program is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
# GNU General Public License for more details. #
# #
# You should have received a copy of the GNU General Public License #
# along with this program. If not, see http://www.gnu.org/licenses/. #
# ____________________________________________________________________ #
# #
# Usage: ./compile.sh [-fopenmp]
#
# The optional argument -fopenmp can be supplied to enable multi-threading.
# By default multi-threading will be disabled to allow compilation on Mac
# with Clang.
## Mac version - tested in OSX 15.3.1 -- MC Toribio 2025/04/25:
## Homebrew was used to install gcc and wcslib
## The following changes were made to this script:
## 1. Created an alias to use the gcc version installed by homebrew (otherwise it will still use the default Mac's clang) -- L47
## 2. Added path to WCS library installed by homebrew when compiling WCS.c and sofia.c -- L48-49,L93,L101
#Alias and export needed for Mac
alias gcc='gcc-14'
export LDFLAGS="-L/opt/homebrew/opt/wcslib/lib"
export CPPFLAGS="-I/opt/homebrew/opt/wcslib/include"
echo "_______________________________________________________________________"
echo
echo " Installing SoFiA (using C compiler and WCSLIB)"
echo "_______________________________________________________________________"
echo
# Compile source files
echo " Compiling src/common.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/common.o -c src/common.c
echo " Compiling src/statistics_flt.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/statistics_flt.o -c src/statistics_flt.c
echo " Compiling src/statistics_dbl.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/statistics_dbl.o -c src/statistics_dbl.c
echo " Compiling src/Table.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Table.o -c src/Table.c
echo " Compiling src/String.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/String.o -c src/String.c
echo " Compiling src/Stack.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Stack.o -c src/Stack.c
echo " Compiling src/Path.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Path.o -c src/Path.c
echo " Compiling src/Array_dbl.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Array_dbl.o -c src/Array_dbl.c
echo " Compiling src/Array_siz.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Array_siz.o -c src/Array_siz.c
echo " Compiling src/Array_chr.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Array_chr.o -c src/Array_chr.c
echo " Compiling src/Map.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Map.o -c src/Map.c
echo " Compiling src/Matrix.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Matrix.o -c src/Matrix.c
echo " Compiling src/LinkerPar.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/LinkerPar.o -c src/LinkerPar.c $1
echo " Compiling src/Parameter.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Parameter.o -c src/Parameter.c
echo " Compiling src/Source.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Source.o -c src/Source.c
echo " Compiling src/Catalog.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Catalog.o -c src/Catalog.c
echo " Compiling src/Flagger.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Flagger.o -c src/Flagger.c
echo " Compiling src/WCS.c"
gcc $LDFLAGS $CPPFLAGS --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/WCS.o -c src/WCS.c
echo " Compiling src/Header.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Header.o -c src/Header.c
echo " Compiling src/DataCube.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/DataCube.o -c src/DataCube.c $1
echo " Compiling src/Help.c"
gcc --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o src/Help.o -c src/Help.c $1
echo " Compiling sofia.c"
gcc $LDFLAGS $CPPFLAGS --std=c99 --pedantic -Wall -Wextra -Wshadow -Wno-unknown-pragmas -Wno-unused-function -Wfatal-errors -O3 -o sofia src/common.o src/statistics_flt.o src/statistics_dbl.o src/Table.o src/String.o src/Stack.o src/Path.o src/Array_dbl.o src/Array_siz.o src/Array_chr.o src/Map.o src/Matrix.o src/LinkerPar.o src/Parameter.o src/Flagger.o src/WCS.o src/Header.o src/DataCube.o src/Source.o src/Catalog.o src/Help.o sofia.c -lm -lwcs $1
# Remove object files
#rm -rf src/*.o
# Print instructions
echo "_______________________________________________________________________"
echo
echo " Installation complete"
echo "_______________________________________________________________________"
echo
echo " Please check above for any error messages produced by the compiler"
echo " before proceeding with the instructions below. If no error messages"
echo " have occurred, you can choose to create a symbolic link in /usr/bin"
echo " to make SoFiA available across your system:"
echo
echo " sudo ln -s ${PWD}/sofia /usr/bin/sofia"
echo
echo " Alternatively, if you don't have root privileges on your system, an"
echo " alias can be set in your .bashrc or .cshrc configuration file. Once"
echo " complete, SoFiA can then be invoked via 'sofia <parameter_file>'."
echoEdited by SoFiA