Merged finally into the master branch
2.1.0 and afterwards Trimmomatic parsing error
Conda packaging
Prepare for conda build
Fix notrimming
Fix kraken_batch.png and add setup.py
QCumber 2.0.0
Change name of mapping filename to samwq
Minor fixes
Fix Illumina single end data
Fix issues when input -1 / -2 files
Check if reference is a fasta file
Fix reading custom parameter.txt
Remove default trimOptions -> Get from parameter.txt instead
Add notrimming and fix run_bowtie and run_kraken without trimming. Plot barplot using summary.json. Automatically determine technology.
Add option -notrimming; Output error if no reads remained after trimming
Add license