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Update Scripts Descriptions authored by Alex Trouern-Trend's avatar Alex Trouern-Trend
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Scripts-Descriptions.md
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...@@ -45,7 +45,7 @@ Name | Step | Purpose | Input | Expected Output | Notes ...@@ -45,7 +45,7 @@ Name | Step | Purpose | Input | Expected Output | Notes
wholegenomebusco.sh | assembly stats | Use [BUSCO](https://busco.ezlab.org/) to assess genome completeness | Length-filtered/softmasked genome assembly & appropriate single-copy ortholog dataset | Genome completeness benchmark results including predicted genes, alignment results & statistics | wholegenomebusco.sh | assembly stats | Use [BUSCO](https://busco.ezlab.org/) to assess genome completeness | Length-filtered/softmasked genome assembly & appropriate single-copy ortholog dataset | Genome completeness benchmark results including predicted genes, alignment results & statistics |
#### Preparing TSA Files #### Preparing TSA Files
Processing the TSA files from NCBI to be used as evidence for genome annotation tool was accomplished by frame-selecting using [TransDecoder](https://github.com/TransDecoder/TransDecoder/wiki) and clustering with [USearch (v9.0)](https://www.drive5.com/usearch/manual9/) Processing the TSA files from NCBI to be used as evidence for genome annotation tool was accomplished by frame-selecting using [TransDecoder](https://github.com/TransDecoder/TransDecoder/wiki) and clustering with [USearch (v9.0)](https://www.drive5.com/usearch/manual9/).
Name | Step | Purpose | Input | Expected Output | Notes Name | Step | Purpose | Input | Expected Output | Notes
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