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#9/28/18#
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Put your name next to species you are working on
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* Arabidopsis
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* Mouse
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* C. elegans
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* Drosophila
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* Yeast
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Overall plan - Model species first:
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* gather resources - transcriptomes, proteins (softmasks, repeats)
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* compare maker and braker results
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* ultimately compare with our tool
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Resources - Save to gitlab:
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* genomes
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* proteins
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* transcriptomes
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* repeat libraries (might exist)
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* softmask (might exist - might not be filtered to correct length)
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* save notes about what you found, where, and what filtering was necessary in dir for each organism
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Preprocessing before braker/maker
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* rm scaffolds < 500bp
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* softmask using repeat library in repeatmasker
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Start aligning using misc evidence
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* maker
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* braker
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* see related papers
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#9/17/18#
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