Problems compiling OpenMolcas under Cygwin
Hi, I am trying to compile OpenMolcas under Cygwin (Windows 10) :
This is the cmake output:
-- Found PythonInterp: /usr/bin/python3.7 (found suitable version "3.7.4", minimum required is "3.0")
Configuring compilers:
-- The Fortran compiler identification is GNU 7.4.0
-- The C compiler identification is GNU 7.4.0
-- Check for working Fortran compiler: /usr/bin/f95
-- Check for working Fortran compiler: /usr/bin/f95 -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/f95 supports Fortran 90
-- Checking whether /usr/bin/f95 supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
Detecting Molcas version info:
-- OPENMOLCAS_VERSION: v18.09-757-g2deaea16
Detecting system info:
-- OS: CYGWIN-x86_64
-- ADDRMODE: 64
CMake Warning (dev) at CMakeLists.txt:574 (elseif):
Policy CMP0054 is not set: Only interpret if() arguments as variables or
keywords when unquoted. Run "cmake --help-policy CMP0054" for policy
details. Use the cmake_policy command to set the policy and suppress this
warning.
Quoted variables like "CYGWIN" will no longer be dereferenced when the
policy is set to NEW. Since the policy is not set the OLD behavior will be
used.
This warning is for project developers. Use -Wno-dev to suppress it.
-- PLATFORM: WIN64
Configuring HDF5 support:
-- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (found version "")
-- HDF5 not found, it will be deactivated
Configuring linear algebra libraries:
-- Using Molcas' LAPACK+BLAS libraries (SLOW!)
-- LINALG_LIBRARIES: lapack;blas
Gromacs interface DISABLED
BLOCK interface DISABLED
CHEMPS2 interface DISABLED
MSYM support DISABLED
DMRG support DISABLED
HDF5 QCMaquis interface DISABLED
NECI interface DISABLED
EFP interface DISABLED
GEN1INT support DISABLED
libwfa support DISABLED
NEVPT2 support DISABLED
External GRID_IT DISABLED
Configuring runtime environment settings:
-- DEFMOLCASMEM: 2048
-- DEFMOLCASDISK: 20000
-- RUNSCRIPT: $program $input
-- RUNBINARY: $program
-- RUNBINARYSER: $program
Build type: Release
-- C compiler: /usr/bin/cc
-- C compiler flags: -std=gnu99 -O2
-- Fortran compiler: /usr/bin/f95
-- Fortran compiler flags: -cpp -fno-aggressive-loop-optimizations -fdefault-integer-8 -O2
-- Definitions: _MOLCAS_;_I8_;_LINUX_;_CYGWIN_
-- Debug definitions:
-- pymolcas: added to targets
Definitions: -D_MOLCAS_;-D_I8_;-D_LINUX_;-D_CYGWIN_
Configuring documentation
-- Sphinx compiler: no sphinx-build available, documentation disabled
Install directory: /opt/molcas
-- Configuring done
-- Generating done
-- Build files have been written to: /home/Pablo/OpenMolcas/buildIt looks OK, when running make it ends with following output:
Scanning dependencies of target prgms
[ 0%] Generating data/MolGUI.prgm
[ 0%] Generating data/alaska.prgm
[ 0%] Generating data/averd.prgm
[ 0%] Generating data/caspt2.prgm
[ 0%] Generating data/casvb.prgm
[ 0%] Generating data/ccsdt.prgm
[ 0%] Generating data/chcc.prgm
[ 0%] Generating data/check.prgm
[ 0%] Generating data/cht3.prgm
[ 0%] Generating data/cpf.prgm
[ 0%] Generating data/dmrgscf.prgm
[ 0%] Generating data/dynamix.prgm
[ 0%] Generating data/espf.prgm
[ 0%] Generating data/expbas.prgm
[ 0%] Generating data/extf.prgm
[ 0%] Generating data/ffpt.prgm
[ 0%] Generating data/gateway.prgm
[ 0%] Generating data/genano.prgm
[ 0%] Generating data/global.prgm
[ 0%] Generating data/guessorb.prgm
[ 0%] Generating data/guga.prgm
[ 0%] Generating data/gugaci.prgm
[ 0%] Generating data/gugadrt.prgm
[ 0%] Generating data/inporb_files.prgm
[ 0%] Generating data/last_energy.prgm
[ 0%] Generating data/localisation.prgm
[ 0%] Generating data/loprop.prgm
[ 0%] Generating data/mbpt2.prgm
[ 0%] Generating data/mckinley.prgm
[ 0%] Generating data/mclr.prgm
[ 0%] Generating data/mcpdft.prgm
[ 1%] Generating data/motra.prgm
[ 1%] Generating data/mpprop.prgm
[ 1%] Generating data/mpssi.prgm
[ 1%] Generating data/mrci.prgm
[ 1%] Generating data/nevpt2.prgm
[ 1%] Generating data/numerical_gradient.prgm
[ 1%] Generating data/poly_aniso.prgm
[ 1%] Generating data/qmstat.prgm
[ 1%] Generating data/quater.prgm
[ 1%] Generating data/rasscf.prgm
[ 1%] Generating data/rassi.prgm
[ 1%] Generating data/rpa.prgm
[ 1%] Generating data/scf.prgm
[ 1%] Generating data/seward.prgm
[ 1%] Generating data/single_aniso.prgm
[ 1%] Generating data/slapaf.prgm
[ 1%] Generating data/surfacehop.prgm
[ 1%] Generating data/symmetrize.prgm
[ 1%] Generating data/vibrot.prgm
[ 1%] Generating data/wfa.prgm
[ 1%] Built target prgms
Scanning dependencies of target parnell.exe
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/main.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_base.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_cmd.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_collect.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_copy.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_exec.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_init.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_reduce.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_remove.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_replica.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_rmlist.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_scatter.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_translate.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_unlink.c.o
[ 1%] Building C object CMakeFiles/parnell.exe.dir/src/parnell/parnell_wipe.c.o
[ 1%] Linking C executable bin/parnell.exe.exe
[ 1%] Built target parnell.exe
Scanning dependencies of target mods_obj
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/active_space_solver_cfg.f90.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/stdalloc.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/blockdiagonal_matrices.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/deaf.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/efp.f90.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/efp_module.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/fortran_strings.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/filesystem.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/gas_data.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/general_data.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/geolist.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/gugx_data.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/her_rw.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/isd_data.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/isotopes.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/k2_arrays.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/k2_setup.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/leg_rw.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/mh5.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/mpmc.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/orb_type.f.o
[ 1%] Building Fortran object CMakeFiles/mods_obj.dir/src/Modules/period.f.o
f951: compiler internal error: Segmentation fault
make[2]: *** [CMakeFiles/mods_obj.dir/build.make:323: CMakeFiles/mods_obj.dir/src/Modules/period.f.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:2527: CMakeFiles/mods_obj.dir/all] Error 2
make: *** [Makefile:130: all] Error 2Any idea or suggestion?
Thanks in advance
Edited by Jellby