Commit e3ec7a7a authored by Denis Jacob Machado's avatar Denis Jacob Machado

Update README.md

parent 7ca828c2
......@@ -2,8 +2,6 @@ AWA - Copyright (C) 2017 - Denis Jacob Machado
version 20170413
---
# i. AVAILABILITY
AWA comes with ABSOLUTELY NO WARRANTY!
......@@ -21,8 +19,6 @@ conditions.
Also, check the wiki page that are available at
https://gitlab.com/MachadoDJ/awa/wikis/home/.
---
# ii. CONTACT
* Author: Denis Jacob Machado
......@@ -30,8 +26,6 @@ https://gitlab.com/MachadoDJ/awa/wikis/home/.
* Email: denisjacobmachado@gmail.com
* Our lab's website: http://www.ib.usp.br/grant/anfibios
---
# iii. SUMMARY
The “AWA” project integrates software solutions for testing
......@@ -42,8 +36,6 @@ applications for all types of circular DNA. The current
version should be considered a draft and has only been
tested for mitogenome assemblies of frog DNA.
---
# 1. DEPENDENCIES
AWA was written in Python v3.5.1 on a macOS v10.12.4 and has
......@@ -58,8 +50,6 @@ The programs awa-map and awa-boot require a working
installation of Bowtie2 (see
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml).
---
# 2. BEFORE START USING AWA
Keep in mind this is beta software that was designed very
......@@ -73,8 +63,6 @@ interleave.
Reference sequence must be provided as a single .fasta
file.
---
# 3. WHAT IS INSIDE
The program awa-trim searches for the largest possible
......@@ -101,8 +89,6 @@ bases on the 100 pb in the middle of the flipped sequence.
A complete tutorial with example files in currently being
prepared and should be available soon.
---
# 4. INSTALL
As it is, download awa scripts and the awa_module folder to
......@@ -110,8 +96,6 @@ your computer, make the scripts executable, and add them to
your PATH. Make sure the awa_module folder is in the same
directory as the 3 awa scripts.
---
# CITE
Machado D.J., Janies D., Brouwer C. R., & Grant T.(under
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment