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Update Pipeline description authored by Marie Lahaye's avatar Marie Lahaye
......@@ -326,6 +326,8 @@ exonerate --model p2g --query <query.fasta> --target localhost:12886 \
### GlimmerHMM
**Version**: 3.0.4
**Publication**: [TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders](https://pubmed.ncbi.nlm.nih.gov/15145805/)
**GitHub**: [https://github.com/kblin/glimmerhmm](https://github.com/kblin/glimmerhmm)
......@@ -364,6 +366,8 @@ glimmerhmm -n 1 -g -o <out.gff> <file.fasta> path/to/training/dir/
### MAKER
**Version**: 3.01.03
**Maker publications**: [MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes](https://pubmed.ncbi.nlm.nih.gov/18025269/) and [MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects](https://pubmed.ncbi.nlm.nih.gov/22192575/)
**Maker source code**: [http://www.yandell-lab.org/software/maker.html](http://www.yandell-lab.org/software/maker.html)
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