Tags

Tags give the ability to mark specific points in history as being important

0.10.0

c5a2b2af · Use python's tempfile to manage temporary directory creation/deletion · Jul 21, 2021

0.10.0

* Add a license
* Update to Python 3
* Proper directory management for output and temporary files
* New option -n/--run-name to set the run name, leaving
  -o/--outdir to use for specifying the output directory

0.9.0

7ad7e263 · Temporary solution to unique tmp file (fixed issue #15 ) · Nov 30, 2016

0.9.0

* New documentation
* Improvement to output format
* General cleanups
* Fixed bugs in handling of partial MIRU sequences

0.6.0

b8b9e60a · Major refactor plus new features · Oct 28, 2016

0.6.0

*Fixed Miru region 24 bug
*added differentiation between Mtb, M. canettii

0.5.0

7712e189 · Improved lineage-typing rules · Oct 28, 2016
```
0.5.0

Improved lineage typing rules, output lineage.
```

0.4.0

b09ed2f7 · Added in Spoligo Spacer checks · Oct 28, 2016

0.4.0

Added in spoligotyping functionality to output spoligotype and miru-type information.

0.3.0

c0b33b9e · Added argparse, new functions, and output to screen · Oct 28, 2016
```
0.3.0

Added argparse, new functions for file-writing, and output to screen.
```

0.2.1

3d3b0dbd · General Refactor · Oct 28, 2016

0.2.1

This version adds in functionality to find partial miru-sequences
at the end of repeats, and also defines a function to check for overlap.

0.2.0

7e42c56a · Added the sequences for miru-24 · Oct 28, 2016
```
0.2.0

Miru12 regions updated to include miru24 regions.
```

0.1.0

0f6d8f94 · De-duplicate MiruHero scripts · Oct 28, 2016

0.1.0 Initial Release

This version looks for Miru12 regions in a fasta file.

0.0

0173fb42 · Deleted print statement · Oct 25, 2016