annomerge - indexerror in accessing prokka_rejects
This is seen with hybran runs that include H37Rv_KOmetA.
11:58:59 10-14:DEBUG:Annomerge:Final feature annotation verification
Please cite:
[manuscript submitted]
Traceback (most recent call last):
File "/grp/valafar/conda/envs/hybran/bin/hybran", line 8, in <module>
sys.exit(main())
File "/grp/valafar/conda/envs/hybran/lib/python3.7/site-packages/hybran/hybran.py", line 209, in main
seq_covg=args.coverage_threshold)
File "/grp/valafar/conda/envs/hybran/lib/python3.7/site-packages/hybran/annomerge.py", line 2412, in run
last_gene = prokka_rejects[0][0]
IndexError: list index out of range