So far, the code is in place to find inversions and write a partial VCF record for it. Still to do is to write a complete VCF record and reverse the inversion before letting it run through diff.
Step 1. Fetch and check out the branch for this merge request
git fetch origin git checkout -b 1-in-place-inversions-are-not-properly-accounted-for origin/1-in-place-inversions-are-not-properly-accounted-for
Step 2. Review the changes locally
Step 3. Merge the branch and fix any conflicts that come up
git fetch origin git checkout origin/master git merge --no-ff 1-in-place-inversions-are-not-properly-accounted-for
Step 4. Push the result of the merge to GitLab
git push origin master
Note that pushing to GitLab requires write access to this repository.
Tip: You can also checkout merge requests locally by following these guidelines.