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Commits (3)
...@@ -14,6 +14,14 @@ To run the test suite, you will additionally need the following: ...@@ -14,6 +14,14 @@ To run the test suite, you will additionally need the following:
# Installation # Installation
## Conda
biodiff is available as a conda package via bioconda so it may be installed as follows:
~~~
$ conda install -c bioconda biodiff
~~~
## Release Distribution ## Release Distribution
The release distribution is *not* the same as the source code downloads produced by Gitlab. The release distribution is *not* the same as the source code downloads produced by Gitlab.
......
...@@ -23,7 +23,8 @@ installcheck-local: ...@@ -23,7 +23,8 @@ installcheck-local:
PATH="$(srcdir)/test/exec:$$PATH" $(srcdir)/test/integration-wrapper PATH="$(srcdir)/test/exec:$$PATH" $(srcdir)/test/integration-wrapper
%.1: %.1.md %.1: %.1.md
$(PANDOC) -s --from=markdown --to=man $< > $@ sed '/^\[!/d' $< `# Remove conda badge before converting to man` \
| $(PANDOC) -s --from=markdown --to=man > $@
# Convert markdown documentation to true plain text # Convert markdown documentation to true plain text
# (no matter how much you try, markdown source won't really be as readable as formatted plain text) # (no matter how much you try, markdown source won't really be as readable as formatted plain text)
......
% BIODIFF(1) 0.2 % BIODIFF(1) 0.2
% Afif Elghraoui <aelghraoui@sdsu.edu> % Afif Elghraoui <aelghraoui@sdsu.edu>
% February 2017 % February 2017
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io/recipes/biodiff/README.html)
# NAME # NAME
...@@ -56,10 +57,13 @@ bcftools isec query1.vcf.gz query2.vcf.gz ...@@ -56,10 +57,13 @@ bcftools isec query1.vcf.gz query2.vcf.gz
# BUGS # BUGS
Please see our issue tracker for known issues. **biodiff** currently does not properly handle in-place inversions.
Please report issues at
https://gitlab.com/LPCDRP/biodiff/issues https://gitlab.com/LPCDRP/biodiff/issues
# SEE ALSO # SEE ALSO
**bcftools**(1) **bcftools**(1)
**dnadiff**(1) **dnadiff**(1)
**Assemblytics**(1)