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1.3.0 protected
Poetry version * Moved from anaconda-compatible setup.py setuptools-based approach to Poetry-based builds. * Implemented multi-dataset plotting using the quickslicer * Safeguarded some script files with __name__ boilerplate * Improved committee nets
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1.2.2 protected
edgerun10 version Updated CI to use python3.8 by default Added "edgerun10" reference script for filtering QLK data Updated dataslicer to allow to optionally connect to NNDB Increase testing surface
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1.2.0 protected
Edgy-Camille version Big improvements again on the EdgeSets, HornNets, MarionNets, megarun3, and pipeline side of things. Notably: - HornNet * Quickslicer and training improvements https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/24 - quickslicer now also outputs abs abs thresh mismatch and the mean of all measures - target data for multi-output NNs can be scaled with mean of stds - hyperparameters can be tracked in TensorBoard for hyperparameter scans - load_from_store without columns (columns=False) - repeating feature_names in megaHornNet - Test and build pipeline https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/26 https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/33 https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/35 https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/36 https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/37 * Add full CI test pipeline for Python3.6 and Python3.8. Target Python is * Python 3.7. (999737d4, dc0a4876, 534366c5, da6bad29, 5eb17813) * Use conda-friendly packaging using .txt files (b13f7218) * Use setuptools_scm to set the version of the package (e6ab479c) * Do not upload full venv as job artifact (586d99e8) [thanks Francis noticing file system explosion] * Require at least TensorFlow 2.2.0 to run Dan Nieuwenhuizens workflows on m100 (b13f7218) * Replaced ye olde mega_nn.py and replaces it with a new and shiny qlknn_hyper_10D.py. See a7070727 - More flexible clipping (e104fc52, c73798d4) - Allow momentum filter to allow for negative values (a6adefee) * Drops support for Python 2.7 (f8bb4cff) * Blackify.py files: - setup.py (e0537d6b) - All python files (c4277fd8, a6adefee) - All python scripts (35a9019c, 90338421) * Blackify ignore list can be found in .git-blame-ignore-revs, see (01bb3a72, 1c990405) * Upgrades Black to use pyproject.toml and use python 3.7 syntax * Creates a new global fixture store_path build from * qlk_h5_gen5_4D_dataset for testing of gen5-aware code * Moves the existing tests to use above fixture * Adds a silly echo function to qlknn/training/keras_models.py:QLKNet to * test partial initialization of Keras classes * Adds initial mostly empty tests for Camille's edgerun code * Adds fallbacks to outlier dropping * Build packages on every tag - Implement Sphinx documentation and CI for qlknn package https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/27 * Autoparse requirements*.txt (1d26f946) * Clean up package dependencies (1d26f946, 1ecf2b71) * Use scripting over YAML constructs (1ecf2b71, 1ecf2b71) * Use Sphinx instead of Doxygen (126880b9) - Add workaround for pip install bug https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/29 * See https://github.com/pypa/pip/issues/7953 relating to editable installs - Quickslicer cleanup https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/30 * Move CLI interface from docopt to argparse (88615aee, dc5f6dd1) * Make qlknn_hyper_10D.py usable in the quickslicer (c3445450) * Allow slicing with the "wrong" dataset {e.g. 9D and 4D for 7D networks} (7decf15b, 127ac2e2) * Add quickslicer as console script (5a30f06a) * Reduce reliance on global variables (9e2403be) * Move testdata to dedicated folder (4ef94768) * Disable luigi tests (7d378723) * Add tests and testdata for - quickslicer (3d459e7b, 090aa7dd, 7ae1e47a) - committees (d8bee41a) - FFNNs (08d7031e, 9aa23dee) * Shuffle the dataset is now the default (1d31cfb2) - Clustering scripts by @BartKremers and @aaronkho https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/28 - MarionNets https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/31 https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/32 preparing for divnet training for QLKNN-11D and MarionNets: * pytest test suite improvements - General cleanup (c0cd2481) - Add tests for divsum variables in dataset (fcd5f92e, bdd19f19, 7622d5bb) - Removal of unused tests (7c5b6ad9, 6df4b1b7) - Add new "CLI-like python code" tester (9e8db883, 928c511c, 0ed9c395) * qlknn refactor - Move all code to Black codestyle (4f43f45c, 60451e24), see https://black.readthedocs.io - Tiny internal syntax improvements (c822debe) - WIP code to misc (4eeb8283) * Add more entry points for CLI tools (7002755b, a74bbeb2) * Allow generating divsum variables on the fly for QLKNN training (9359d21b, ce1c14b2, 1792a38b, d3b63ed1, c9b35831) * Improvements to docs (d7d30297) * Karel-style linter settings (d60d4fd1) * Improved indexing and low/high bounds for get_output (6d1de645), thanks @MESmedberg - CamilleNets https://gitlab.com/qualikiz-group/QLKNN-develop/-/merge_requests/34 * Implements all contributed CamilleNet scripts. Thanks @cambouvy
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1.1.0 protected Release: 1.1.0
Keras-enabled version Big improvement on usability in the glorious post-paper time. Most notably, training loop finally uses TF2.0/keras! Not much loss in performance. - Main training loop now uses TensorFlow>=2.0, and can use Keras features * https://gitlab.com/Karel-van-de-Plassche/QLKNN-develop/-/merge_requests/17 - Improvement to quickslicer * https://gitlab.com/Karel-van-de-Plassche/QLKNN-develop/-/merge_requests/20 - Improved debugging * https://gitlab.com/Karel-van-de-Plassche/QLKNN-develop/-/merge_requests/23 - Committee nets with multiple outputs A. Ho, publication in preparation. * https://gitlab.com/Karel-van-de-Plassche/QLKNN-develop/-/merge_requests/12 - Add CMGnets (later dubbed HornNets), see P. Horn MSc thesis. Publication in preparation * https://gitlab.com/Karel-van-de-Plassche/QLKNN-develop/-/merge_requests/18 * https://gitlab.com/Karel-van-de-Plassche/QLKNN-develop/-/merge_requests/19 * https://gitlab.com/Karel-van-de-Plassche/QLKNN-develop/-/merge_requests/22 - Improve filtering for committee nets A. Ho, publication in preparation. * https://gitlab.com/Karel-van-de-Plassche/QLKNN-develop/-/merge_requests/16 * https://gitlab.com/Karel-van-de-Plassche/QLKNN-develop/-/merge_requests/15 - Allow loading parts of Kerasnets * https://gitlab.com/Karel-van-de-Plassche/QLKNN-develop/-/merge_requests/13 - Allow not shuffling every epoch, saves time in large-dataset, small-network cases. See R. Winkler MSc thesis * https://gitlab.com/Karel-van-de-Plassche/QLKNN-develop/-/merge_requests/14
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