DPCfamW

Project information

DPCfam Workstation version. Runs on Linux-based systems. Developed and tested on Ubuntu 18. DPCfamW uses the moodycamel::ConcurrentQueue library ( https://github.com/cameron314/concurrentqueue ) freely available provided citation (Simplified BSD license). This version replicates the pipeline used in to anlayze UniRef50 (v. 2017_07) as in Unsupervised protein family classification by Density Peak clustering, Russo ET, 2020, PhD Thesis ( http://hdl.handle.net/20.500.11767/116345 ), but with smaller datasets. Largest dataset we analysed is the TESTproteins_cd50.fasta datased we provide in this package. Due to memory bounds we do not guarantee that the abalysis of largest datasets is acheivable with this version.

clustering